RNA id: TCONS_00019208


Basic Information

Item Value
RNA id TCONS_00019208
length 434
lncRNA type antisense_over
GC content 0.45
exon number 2
gene id XLOC_009367
representative True

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 32813736 ~ 32817995 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CAGGCAGGGCTGTCCGTTTACTATTTACCCAGTCTATTTACCATGATAAAGGCTTTGGAGTTAATTGTCAGTTACATGAACAAAAGCATTCACACAAAAACAGACAAGAACCCATCCGTCTTCAGTCATTGTTTGAAATCATGACTTTTGGTTTTTGCTCTTAAAAATGAACACCTGAAACATGTCTATTTTTGGTCTTTGTGTTTCTCGAGTTCACTGCCCGGCTGCTGGACTTTGTAGTCTGACAGAAGGGCATGGGCAGTTTCTTTGCCGGTCTTCTTGACCATTGCTTTGATCCCCAGGTTGTCGATATTGAAGGCCGTGACGCCCACATTGATAGCCGAGTTGACAGCATGGTCTGTGGCCTGACCCGCATCTGGCCCATACATGTAAGCTCCAGCCATGCTCGTGACCATTAATTAAGGCCATTTTAT

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00019206 lncRNA downstream 178263 32633290 ~ 32635777 (-) False XLOC_009366
TCONS_00018406 lncRNA downstream 178263 32634811 ~ 32635777 (-) False XLOC_009366
TCONS_00018407 lncRNA downstream 178263 32635069 ~ 32635777 (-) True XLOC_009366
TCONS_00018405 lncRNA downstream 179108 32633290 ~ 32634932 (-) False XLOC_009366
TCONS_00019205 lncRNA downstream 380367 32413314 ~ 32433673 (-) True XLOC_009364
TCONS_00018410 lncRNA upstream 416554 33234478 ~ 33243601 (-) False XLOC_009368
TCONS_00018411 lncRNA upstream 427046 33244970 ~ 33246764 (-) False XLOC_009368
TCONS_00018834 lncRNA upstream 848000 33665924 ~ 33681678 (-) True XLOC_009371
TCONS_00018425 lncRNA upstream 1050737 33868661 ~ 33886153 (-) False XLOC_009376
TCONS_00019209 lncRNA upstream 1051655 33869579 ~ 33877331 (-) True XLOC_009377
TCONS_00018404 mRNA downstream 217885 32437281 ~ 32596155 (-) True XLOC_009365
TCONS_00018403 mRNA downstream 218058 32436907 ~ 32595982 (-) False XLOC_009365
TCONS_00018400 mRNA downstream 430511 32351886 ~ 32383529 (-) False XLOC_009363
TCONS_00018408 mRNA upstream 77735 32895659 ~ 33325046 (-) False XLOC_009368
TCONS_00018409 mRNA upstream 79153 32897077 ~ 33172246 (-) False XLOC_009368
TCONS_00018412 mRNA upstream 458202 33276126 ~ 33304133 (-) False XLOC_009368
TCONS_00018413 mRNA upstream 489261 33307185 ~ 33325019 (-) True XLOC_009368
TCONS_00018414 mRNA upstream 649374 33467298 ~ 33640890 (-) False XLOC_009369
TCONS_00018399 other downstream 750631 32063292 ~ 32063409 (-) True XLOC_009362
TCONS_00018396 other downstream 1266188 31547734 ~ 31547852 (-) True XLOC_009360
TCONS_00018378 other downstream 1451899 31361787 ~ 31362141 (-) True XLOC_009348
TCONS_00018372 other downstream 1498492 31315209 ~ 31315548 (-) True XLOC_009344
TCONS_00018370 other downstream 1514362 31299563 ~ 31299678 (-) True XLOC_009342
TCONS_00018418 other upstream 845131 33663055 ~ 33663172 (-) True XLOC_009370
TCONS_00018421 other upstream 888756 33706680 ~ 33734106 (-) True XLOC_009372
TCONS_00018452 other upstream 1461497 34279421 ~ 34279535 (-) True XLOC_009383
TCONS_00018481 other upstream 2277281 35095205 ~ 35112786 (-) False XLOC_009398
TCONS_00018488 other upstream 2349371 35167295 ~ 35212237 (-) True XLOC_009400