RNA id: TCONS_00018432


Basic Information

Item Value
RNA id TCONS_00018432
length 2351
RNA type mRNA
GC content 0.50
exon number 12
gene id XLOC_009378
representative False

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 33891808 ~ 33933820 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GAATGGGCCGAGTGGATGGAACAATGCTCCCCGCTCTGAGCCCCTGACATTTTCATATAGAACGGTGGAGTTGAAAGGAgcccacctcctcctcctcctcgtcctccTCCTCCCCCGTCCGGCCCACCCCGCCTGGTACAGAAGGTGGCAAGAGAGGCCTCCATCCCATCAGCATGCGTGCATGTCATTGTGAATGTTTGTCATGCTATGGTTTTCCTCTGCTGATTAATGCTTGATTTGAGCTGTGGACGTTTGGAAGCGTTTGACTGAGCAGGAGGACTTTGAAGAACCAGGAGCTGAGAGACGAGTTGGTCCCCTTTAGAAGAGTACCCAAGACTGGACTGTGGATCTGGTATGAGAGGTCTATGGTCCAGATTTAAACTGAGACCATGAAGGGCTTAGAGCTGCTGCTTTTGCCTCTGCTGCTTTTACTGAAAGATGCAAGCGCTCAGTGGAATGTGTGGATGCCCAGAGACATTTCAGCCATGACAAACTCCTGCGTGGTTATACCATGTTCATTCACATACCCCTCTGGCATCAGGCCTTACAGGGGGGTTCATGGGATCTGGTATTTCGGCCACCCCTACCCTCAGCTTTTTCCTCCAGTGGTGCTTAAATCGCGCACAGATATTGTTCACGAAAGTTACAAGGGACGGACCAAGCTTCTGGGCGACCTGACGCAAAAAAACTGCACACTGCTGATAAGTAACATTGGCGTGGAACATTCTGGAAAGTATTACTTCAGGGCAGATCTTGGTGGAGCGAATATCTACACTTTTCCTGACTTCACAAAACTACAGGTGTTGGATCAGCCCAACATTGATGTTCCTGAAGAGATTGTAAGTGATCAAAGCCTGGATTTGACCTGTTATGTCCCAGACAATTGTCCAGACATGAGCCCAGAAATCCACTGGATGTACACGGATTACCTGCCCGACCCAGTTTTCACCCCTGACCAAGTTGAGGAAGGCAACACTGCGGTACTGTCCAGCACCCTCACTTTCACACCCAAACCCATGCACAATGGCCAATTACTGGGTTGCCGGGTCAACTTCCCAAACACCACCTACGTCTACGAACGCCTCATTACCCTGGACATCAGATACGCCCCTCGAACTGTGTGGGTAAACGTATCTCAAGAGGTGATGGAGGGAAGCTCGGTGGTGCTGCATTGTGATGTAGACAGTAATCCTGCCCCTATGATAACATGGTATTTTGGAGACAAAGAGCTGATGTCGGAAACCGCCTCAAATTCTTCACTGTCACTGGAAAATCTAACACCAGAGCAGGAAGGTGTCTATACCTGCGTTGGTGACAATGGATACGGCAACATGAACACGTCCATGTATCTGGCAGTAAATTATCCTCCACGGGAGCCATGGATCAATGAGTCTCTGACGGTGTTGGAGGGATCCTCAGTTTCCCTACAGTGCACCAGCAAAGGTAACCCAATGCCCACATTGACTTGGCTGAAGGATGGGGAGCTGGTGGGAACCATCACAGCAGAGGAGGGATCTGTGCTGGAGTTACATGAGATCATGCCACAGGCTGATGGAGTCTACCGGTGCCTAGCTGAAAATGAGCATGGACGGGCCAGCAGTTCACTTAACATCACAGTagaatTTGCTCCAGTCCTCCTTGATGACTCTAAGTGTACTATAGTCCGTGAGGgtgttcagtgtgtgtgcatTGCCTCTGGAAACCCAGAACCTGCGATTGAATTCTACCTTCCTGACCTCAACGTCACCATCAACAACTCCAACAACCGTTTCAACTACTACACGCACTCAGATGGGTACACATCCACAGGGGTCATCAAGCTACAAGACAAGGGTGAAAGGGGGAACAATGGCGATACCGCTGTCCATGTGCACTGCAGTATCACCAACATATACGGCTCTGAAACCATCCGATTGGAACTGCAGCAGGAGAAGAAGTACATGATGGCCGTCATTGTGGGGACTATCGGAGGTGTAGCGGTCATCGCTTTCATCATTGCAGCTGTGAGATACGTCGGTCAGAATAATAAAAAAGAGAATGGTAATCCTGGGCAGGACGTGGGATCTAAAGTGGAGAATCCCTCAATGTTCTACAGCGCAGTCAAGAAGGACAAACAGAGTCTCAGGAAAAAAGTGCTTAAGACTGAGCTCCTGGGCTCAAAGTTTAACTCCATCCTAGAGGAAGGCACGgGAGACGACAGCGATTACCAATCTGTGGGCCCAATGGCAGGCATGGAGAGGCAAGAGCTGAATTACGCTGCCCTAGAGTTTCTCCATGGACGACACCGAGAGGGAGTTTTCAGGAGGGCTGATGGTGACGGCAGTGACTATACTGAAATTAAAGCTAAATGA

Function

GO:

id name namespace
GO:0007155 cell adhesion biological_process
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005515 protein binding molecular_function
GO:0033691 sialic acid binding molecular_function
GO:0042802 identical protein binding molecular_function
GO:0030246 carbohydrate binding molecular_function

KEGG:

id description
ko04514 Cell adhesion molecules
ko04515 Cell adhesion molecules
ko04091 Lectins

ZFIN:

id description
ZDB-GENE-041217-24 Enables carbohydrate binding activity and identical protein binding activity. Predicted to be involved in cell adhesion. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Is expressed in nervous system. Human ortholog(s) of this gene implicated in hereditary spastic paraplegia 75. Orthologous to human MAG (myelin associated glycoprotein).

Ensembl:

ensembl_id ENSDART00000187780

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00018427 lncRNA downstream 4329 33879353 ~ 33887667 (-) True XLOC_009376
TCONS_00018426 lncRNA downstream 4633 33875205 ~ 33887363 (-) False XLOC_009376
TCONS_00019210 lncRNA downstream 4646 33879353 ~ 33887350 (-) False XLOC_009376
TCONS_00018425 lncRNA downstream 5843 33868661 ~ 33886153 (-) False XLOC_009376
TCONS_00018440 lncRNA upstream 32075 33957926 ~ 33964911 (-) True XLOC_009379
TCONS_00018835 lncRNA upstream 542532 34468383 ~ 34478448 (-) True XLOC_009385
TCONS_00018836 lncRNA upstream 676671 34602522 ~ 34607406 (-) True XLOC_009389
TCONS_00019211 lncRNA upstream 733030 34658881 ~ 34668392 (-) True XLOC_009390
TCONS_00018496 lncRNA upstream 1488615 35414466 ~ 35661368 (-) False XLOC_009404
TCONS_00018424 mRNA downstream 57419 33825750 ~ 33834577 (-) True XLOC_009375
TCONS_00018423 mRNA downstream 73124 33809864 ~ 33818872 (-) True XLOC_009374
TCONS_00018422 mRNA downstream 84238 33744549 ~ 33807758 (-) True XLOC_009373
TCONS_00018420 mRNA downstream 157884 33704751 ~ 33734112 (-) False XLOC_009372
TCONS_00018419 mRNA downstream 157891 33702918 ~ 33734105 (-) False XLOC_009372
TCONS_00018436 mRNA upstream 11905 33937756 ~ 33965440 (-) False XLOC_009379
TCONS_00018437 mRNA upstream 13214 33939065 ~ 33964900 (-) False XLOC_009379
TCONS_00018438 mRNA upstream 13218 33939069 ~ 33964922 (-) False XLOC_009379
TCONS_00018439 mRNA upstream 26041 33951892 ~ 33964897 (-) False XLOC_009379
TCONS_00018441 mRNA upstream 68724 33994575 ~ 34056733 (-) False XLOC_009380
TCONS_00018421 other downstream 157890 33706680 ~ 33734106 (-) True XLOC_009372
TCONS_00018418 other downstream 228824 33663055 ~ 33663172 (-) True XLOC_009370
TCONS_00018399 other downstream 1828587 32063292 ~ 32063409 (-) True XLOC_009362
TCONS_00018396 other downstream 2344144 31547734 ~ 31547852 (-) True XLOC_009360
TCONS_00018378 other downstream 2529855 31361787 ~ 31362141 (-) True XLOC_009348
TCONS_00018452 other upstream 353570 34279421 ~ 34279535 (-) True XLOC_009383
TCONS_00018481 other upstream 1169354 35095205 ~ 35112786 (-) False XLOC_009398
TCONS_00018488 other upstream 1241444 35167295 ~ 35212237 (-) True XLOC_009400
TCONS_00018513 other upstream 2603614 36529465 ~ 36533247 (-) True XLOC_009417
TCONS_00018517 other upstream 2948400 36874251 ~ 36874366 (-) True XLOC_009420

Expression Profile

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