RNA id: TU424450


Basic Information

Item Value
RNA id TU424450
length 534
lncRNA type intronic
GC content 0.42
exon number 2
gene id G371679
representative False

Chromosome Information

Item Value
chromosome id CI01000169
NCBI id null
chromosome length 1065687
location 896699 ~ 901942 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ACTGTCACAAGCCGGGCTAGAACTCGGGTCTCTGGTGTGGTGGTTGAGATATCTGCCACAAGGCCACAGAGACTGTGATGTTGGACCCAAACGAAACACTCAAGGCAGAACTCCAGGCAATGTAGATTTAATAAAAAAAAAAAAAGTATTTTCAAGCAAAAATCCAACAAAAGTTCTTCTCAGACAGAGGTATTAATAACATAAGAGATAATGGAAAAAACCACATGGGAAAATAAAAACTCCACGAGGGGAGAAAACAAAACTAGAGAACATTAATAACCAAATAACTCAAAACACCTTACTTGAGATAGCTTGGAAAGACTTGGAGAGACAAAGCAGGAAGCACGCGGCCAAGACTCAAAAACCAAGTGAGGAACAAGGGGAAAAAACACAACTAAAATACCCTAGGAGAAACAAGGCACAGGTGACCTGGATAATGCTAACAAGGATCCATGTGGAAAAACTAAGGCAGAGGGGAACACAGGGGACCTCTAGAGGCATGGAGACAAACTACAGGAGGTAGGATGCTGACAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU424431 lncRNA downstream 22876 871668 ~ 873823 (-) True G371665
TU424423 lncRNA downstream 44450 850165 ~ 852249 (-) True G371657
TU424421 lncRNA downstream 50638 845272 ~ 846061 (-) True G371655
TU424420 lncRNA downstream 53319 842389 ~ 843380 (-) True G371654
TU424419 lncRNA downstream 58917 837177 ~ 837782 (-) True G371653
TU424435 lncRNA upstream 16808 918750 ~ 931764 (-) True G371668
TU424466 lncRNA upstream 52375 954317 ~ 968234 (-) True G371689
TU424476 lncRNA upstream 86704 988646 ~ 989007 (-) True G371695
TU424487 lncRNA upstream 150502 1052444 ~ 1052765 (-) True G371706
CI01000169_00885977_00886294.mRNA mRNA downstream 10224 885520 ~ 886475 (-) True CI01000169_00885977_00886294
CI01000169_00858567_00865583.mRNA mRNA downstream 31116 858071 ~ 865583 (-) True CI01000169_00858567_00865583
CI01000169_00801511_00803912.mRNA mRNA downstream 92787 800056 ~ 803912 (-) True CI01000169_00801511_00803912
CI01000169_00769848_00794717.mRNA mRNA downstream 101323 769609 ~ 795376 (-) True CI01000169_00769848_00794717
CI01000169_00708005_00711176.mRNA mRNA downstream 185339 706857 ~ 711360 (-) False CI01000169_00708005_00711176
CI01000169_01038714_01039940.mRNA mRNA upstream 136718 1038660 ~ 1040417 (-) True CI01000169_01038714_01039940
CI01000169_01049597_01056495.mRNA mRNA upstream 147335 1049277 ~ 1056794 (-) True CI01000169_01049597_01056495
TU424170 other downstream 233989 662695 ~ 662710 (-) True G371431
TU424171 other downstream 233989 659458 ~ 662710 (-) True CI01000169_00659765_00662464
TU424183 other downstream 465496 421926 ~ 431203 (-) True G371440

Expression Profile