Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00018479 |
| length | 952 |
| RNA type | mRNA |
| GC content | 0.47 |
| exon number | 3 |
| gene id | XLOC_009398 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007126.7 |
| NCBI id | CM002899.2 |
| chromosome length | 48040578 |
| location | 35036368 ~ 35126632 (-) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | description |
|---|---|
| ko04131 | Membrane trafficking |
| id | description |
|---|---|
| ZDB-GENE-050913-10 | Predicted to be located in cytoplasm. Human ortholog(s) of this gene implicated in Hermansky-Pudlak syndrome 8. Orthologous to human BLOC1S3 (biogenesis of lysosomal organelles complex 1 subunit 3). |
| ensembl_id | ENSDART00000099677 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00019211 | lncRNA | downstream | 426573 | 34658881 ~ 34668392 (-) | True | XLOC_009390 |
| TCONS_00018836 | lncRNA | downstream | 487559 | 34602522 ~ 34607406 (-) | True | XLOC_009389 |
| TCONS_00018835 | lncRNA | downstream | 616517 | 34468383 ~ 34478448 (-) | True | XLOC_009385 |
| TCONS_00018440 | lncRNA | downstream | 1130054 | 33957926 ~ 33964911 (-) | True | XLOC_009379 |
| TCONS_00018427 | lncRNA | downstream | 1207298 | 33879353 ~ 33887667 (-) | True | XLOC_009376 |
| TCONS_00018496 | lncRNA | upstream | 313608 | 35414466 ~ 35661368 (-) | False | XLOC_009404 |
| TCONS_00018837 | lncRNA | upstream | 315766 | 35416624 ~ 35661131 (-) | False | XLOC_009404 |
| TCONS_00019212 | lncRNA | upstream | 317646 | 35418504 ~ 35421844 (-) | False | XLOC_009404 |
| TCONS_00019213 | lncRNA | upstream | 317646 | 35418504 ~ 35422791 (-) | True | XLOC_009404 |
| TCONS_00018497 | lncRNA | upstream | 339882 | 35440740 ~ 35468800 (-) | True | XLOC_009405 |
| TCONS_00018475 | mRNA | downstream | 63442 | 35004547 ~ 35031523 (-) | True | XLOC_009397 |
| TCONS_00018474 | mRNA | downstream | 160181 | 34899857 ~ 34934784 (-) | True | XLOC_009396 |
| TCONS_00018472 | mRNA | downstream | 161405 | 34899645 ~ 34933560 (-) | False | XLOC_009396 |
| TCONS_00018473 | mRNA | downstream | 164238 | 34899854 ~ 34930727 (-) | False | XLOC_009396 |
| TCONS_00018471 | mRNA | downstream | 202301 | 34886847 ~ 34892664 (-) | True | XLOC_009395 |
| TCONS_00018482 | mRNA | upstream | 1598 | 35102456 ~ 35112937 (-) | False | XLOC_009398 |
| TCONS_00018483 | mRNA | upstream | 1600 | 35102458 ~ 35112949 (-) | False | XLOC_009398 |
| TCONS_00018484 | mRNA | upstream | 13926 | 35114784 ~ 35126632 (-) | False | XLOC_009398 |
| TCONS_00018485 | mRNA | upstream | 14474 | 35115332 ~ 35126332 (-) | True | XLOC_009398 |
| TCONS_00018486 | mRNA | upstream | 29763 | 35130621 ~ 35134918 (-) | True | XLOC_009399 |
| TCONS_00018452 | other | downstream | 815430 | 34279421 ~ 34279535 (-) | True | XLOC_009383 |
| TCONS_00018421 | other | downstream | 1360859 | 33706680 ~ 33734106 (-) | True | XLOC_009372 |
| TCONS_00018418 | other | downstream | 1431793 | 33663055 ~ 33663172 (-) | True | XLOC_009370 |
| TCONS_00018399 | other | downstream | 3031556 | 32063292 ~ 32063409 (-) | True | XLOC_009362 |
| TCONS_00018396 | other | downstream | 3547113 | 31547734 ~ 31547852 (-) | True | XLOC_009360 |
| TCONS_00018488 | other | upstream | 66437 | 35167295 ~ 35212237 (-) | True | XLOC_009400 |
| TCONS_00018513 | other | upstream | 1428607 | 36529465 ~ 36533247 (-) | True | XLOC_009417 |
| TCONS_00018517 | other | upstream | 1773393 | 36874251 ~ 36874366 (-) | True | XLOC_009420 |
| TCONS_00018535 | other | upstream | 2626976 | 37727834 ~ 37729166 (-) | True | XLOC_009432 |
| TCONS_00018590 | other | upstream | 4968153 | 40069011 ~ 40069127 (-) | True | XLOC_009467 |
