RNA id: TCONS_00018489


Basic Information

Item Value
RNA id TCONS_00018489
length 1185
RNA type mRNA
GC content 0.50
exon number 5
gene id XLOC_009401
representative False

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 35214546 ~ 35224481 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATCATGTTCAACCGCCTTCCTAGGATGCATATATGGGTGTCAAGAGGGCTTaaggattgagCTCTGAACAGCCGAACTTTGATTACCATGCTGAGGTGGAAGCTTTCGGAGTCCGTCTGCAGGAGAGTTTCTCTGTGGATTTGCTGAAGACGGCGTTTGTGAATTCCTGTTACCTACGCTCTGAGGTGGAGAGGAGGAAAGCGCTGGGTTTGGATTCAGAGTCCGCCATCCTTAACCTGAAAGACAACACTGAGCTGCGTGATCACGGTCAACACTTCACTACGGGTTTCCTGAGTGACTGGTGCAAAAACAGCTTTCCTAATCTTCCTGATGAGGGCGTGGCAGCCATTGCAGGTCACCTGACCGGGTCAGAGGTCATATGTCACGTGGCACGAAACCTGGCTGTGGAGGAGCTGACGATGAGTGCAGAGTTTCCTGTGCCGGACCACATCCTGCAGGGAACGTTCTTCGCTGTAATTGGTGCTCTGGAGCAGAGCAGCGGGCCTGTGCGAGCCGGCCTTTTCATCAGGGATTTCCTCGTAACTCAGCTGATAGGCAAAGATCTGTTTGACATGTGGAAAGTGGTGGATCCCATGGGGCTCCTGGTGGAAGAACTGACCCGTAAAGGTGTAGCTCTACCTGAGCCCCGTCTCATCCGCTCTGCTGGAGCCAGCACTGTCCTCCCTTTGTATTTTGTTGGCCTTTACAGTGACCGTAAGCTGTTGGCTCAGGGTCCAGGCGAGACTGTCCTCATAGCTGAAGAAGAAGCGGCTCGAGTGGCTTTGAGGAAACTCTACGGCTTCACAGAGAACCGCAGGCCATTTGACTTCACTGCACCCCGAGACCAGCTTCAGAAGCCCAGCACACAGGCTCTCACCAGCGGATGAATGACACTGTATCATGACTTAAAGAGCATATTCCAGTGGGACACGTTTTGGAGAGCTAAAGTACATGCATTCATCTGCTGTATGTTGGGTGTTGCTGTCAGGTCACTAGAGGCCTGCGTAACATGCCTGAGAGACTCTTAATGTACCACTGACTGACAGTAAAAACATCATATACATCTGCCTTAAGAGCATTCATCTATTATGCAGATGCAGATTCTTTATATTTCATCTGTTGTTGATTAACAACTGTTGTATATAAATGTTACGCTTTGGCTGATAATAAAGGTTCTGAACCGAA

Function

GO:

id name namespace
GO:0030422 production of siRNA involved in RNA interference biological_process
GO:0006396 RNA processing biological_process
GO:0031053 primary miRNA processing biological_process
GO:0031054 pre-miRNA processing biological_process
GO:0005634 nucleus cellular_component
GO:0004525 ribonuclease III activity molecular_function
GO:0003725 double-stranded RNA binding molecular_function

KEGG:

id description
ko03011 Ribosome

ZFIN:

id description
ZDB-GENE-050913-59 Predicted to enable double-stranded RNA binding activity and ribonuclease III activity. Predicted to be involved in RNA processing and regulation of gene expression. Predicted to be active in nucleus. Human ortholog(s) of this gene implicated in combined oxidative phosphorylation deficiency 16. Orthologous to human MRPL44 (mitochondrial ribosomal protein L44).

Ensembl:

ensembl_id ENSDART00000014415

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00019211 lncRNA downstream 546154 34658881 ~ 34668392 (-) True XLOC_009390
TCONS_00018836 lncRNA downstream 607140 34602522 ~ 34607406 (-) True XLOC_009389
TCONS_00018835 lncRNA downstream 736098 34468383 ~ 34478448 (-) True XLOC_009385
TCONS_00018440 lncRNA downstream 1249635 33957926 ~ 33964911 (-) True XLOC_009379
TCONS_00018427 lncRNA downstream 1326879 33879353 ~ 33887667 (-) True XLOC_009376
TCONS_00018496 lncRNA upstream 190293 35414466 ~ 35661368 (-) False XLOC_009404
TCONS_00018837 lncRNA upstream 192451 35416624 ~ 35661131 (-) False XLOC_009404
TCONS_00019212 lncRNA upstream 194331 35418504 ~ 35421844 (-) False XLOC_009404
TCONS_00019213 lncRNA upstream 194331 35418504 ~ 35422791 (-) True XLOC_009404
TCONS_00018497 lncRNA upstream 216567 35440740 ~ 35468800 (-) True XLOC_009405
TCONS_00018487 mRNA downstream 2084 35156414 ~ 35212462 (-) False XLOC_009400
TCONS_00018486 mRNA downstream 79628 35130621 ~ 35134918 (-) True XLOC_009399
TCONS_00018484 mRNA downstream 87914 35114784 ~ 35126632 (-) False XLOC_009398
TCONS_00018485 mRNA downstream 88214 35115332 ~ 35126332 (-) True XLOC_009398
TCONS_00018483 mRNA downstream 101597 35102458 ~ 35112949 (-) False XLOC_009398
TCONS_00018491 mRNA upstream 2500 35226673 ~ 35252548 (-) False XLOC_009402
TCONS_00018492 mRNA upstream 3046 35227219 ~ 35246742 (-) False XLOC_009402
TCONS_00018493 mRNA upstream 3205 35227378 ~ 35252522 (-) True XLOC_009402
TCONS_00018494 mRNA upstream 148734 35372907 ~ 35406564 (-) False XLOC_009403
TCONS_00018495 mRNA upstream 178907 35403080 ~ 35410860 (-) True XLOC_009403
TCONS_00018488 other downstream 2309 35167295 ~ 35212237 (-) True XLOC_009400
TCONS_00018481 other downstream 101760 35095205 ~ 35112786 (-) False XLOC_009398
TCONS_00018452 other downstream 935011 34279421 ~ 34279535 (-) True XLOC_009383
TCONS_00018421 other downstream 1480440 33706680 ~ 33734106 (-) True XLOC_009372
TCONS_00018418 other downstream 1551374 33663055 ~ 33663172 (-) True XLOC_009370
TCONS_00018513 other upstream 1305292 36529465 ~ 36533247 (-) True XLOC_009417
TCONS_00018517 other upstream 1650078 36874251 ~ 36874366 (-) True XLOC_009420
TCONS_00018535 other upstream 2503661 37727834 ~ 37729166 (-) True XLOC_009432
TCONS_00018590 other upstream 4844838 40069011 ~ 40069127 (-) True XLOC_009467
TCONS_00018622 other upstream 6169228 41393401 ~ 41396073 (-) True XLOC_009478

Expression Profile

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