RNA id: TU426898


Basic Information

Item Value
RNA id TU426898
length 149
RNA type TUCP
GC content 0.48
exon number 2
gene id G373724
representative True

Chromosome Information

Item Value
chromosome id CI01000176
NCBI id null
chromosome length 156485
location 62079 ~ 85063 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AAGAAAGAGCGAATCCTGAGACTGAGATGTTGAGCATGAAAGCGCAGATGGATGTGATCTGCTGTAAATCAGTAGGAACTGATCTGTCCATGCTGGATATTGAGGATTTCATCAGTGAAATCTGTCAGCTGAAGAAAGAGGTGGCGTCACTGGAGGCAAAGCTGAGAGAAAGAGGAGACAAACCCAACAGAGAGGATCTGGAGAAGGTTTCAGTGTGTGTGACTGACGGGACAGAAGCTCAGGATTCAGTCTGGAGATCCAGAGACACACAGGACTCAGAGCTCAGCCTCACTTTACTGTGTTATACTGACGCTCAG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU426878 lncRNA downstream 15130 31747 ~ 46949 (-) False G373722
TU426880 lncRNA downstream 15130 37663 ~ 46949 (-) True G373722
TU426874 lncRNA downstream 18192 31747 ~ 43887 (-) False G373722
TU426907 lncRNA upstream 7728 92791 ~ 93175 (-) True G373733
TU426942 lncRNA upstream 55119 140182 ~ 140538 (-) False G373759
TU426944 lncRNA upstream 55119 140182 ~ 140746 (-) True G373759
CI01000176_00007025_00017149.mRNA mRNA downstream 44780 6744 ~ 17299 (-) True CI01000176_00007025_00017149
TU426886 other downstream 13198 31747 ~ 48881 (-) False G373722

Expression Profile