RNA id: TU426886


Basic Information

Item Value
RNA id TU426886
length 4020
RNA type TUCP
GC content 0.44
exon number 17
gene id G373722
representative False

Chromosome Information

Item Value
chromosome id CI01000176
NCBI id null
chromosome length 156485
location 31747 ~ 48881 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GAAAGTGTGGGGGTTTTATTGTGGCAAGTAGTTCAAATTCACTGTAACGTGCAGATCAGTGTGTGATATAGAATCAAAGTGTATGTTTATGGGATATTTGGCATATTGACCTCATGGGAACACCAAACTCAGCCACAGCTTCTTTTAGCAATTATTAAATATTTACTTAAAAAACAACAACAACAAAAAACATGGCAGTACCACATAAAGGAATGAAATTGCTGCTTATTTCCCTCGGATTACAAATCTGAACCGATTGGTGGAAATGCAATAATACACAATGTGCACAGTAACATTACATTCGGAAATCACGTATAATAGTGGACAGAGCATGACAAAATTACAGCCAAAAACTTAATAAAACAAAATAATATCCATGGAAAATGTAAAATAAAACATTTGTTTCTATCAAATATCATCATTACACATACAATAGGTAGCTTAAAAAAACTACCTGTGTTGCAGAAGCAAGAGATTTAAAACTTTTGTATTAGCTTAATCTTCTTACAAAATCACTGTTCTTAAAATGGAGCACTAAAGCCCAAAGTATGAGTTAGTTTTGACGCAAACGCCTTTCAGATTATATGAAGCTTGATTGTGTACGCTATTTTTACCCAGATGTTATAACCCATTAAAAAGTCTTTAAACTATAGAGATGGGGGAATCTCAGAAACGCTTGTCAACGCTAGCGTCTGTTGTTGTTGCGTCTCTTGTGTTTCCTTTTCAAATGTGGACCAACTAATTAGCTAAACAAATTCAAAGCGTGAAGCAAATTCATGCTTGAGCTTAAATCTCTATGGACTAGTATTTCTTCGATTTTGAAGAGGATGAGGAGTTAAGCCTTTTTTGTGACATTAACTAAGACCTGCTCTGTGCAATGCAACGTCGGCTCTGTTTAAATAGCTTCATGAATCTAAAGTACCTCATCTGTTTCCCACATAAATAGAGGCCAAATTTCTCAACAGCTTAAAGACGTAAAGTGGCGTGTAAGTGCAGATCACATAGACCTGCGTCTGTGATTAATTACAGATTAAAGCTTCAGAGAACAGAGGTGTCTTAGAGAAATTACCTTTTCTTAAGGCAGACTGGAGACTAGTTCTTCAAATATCATGTTCACAAACAACTTTTCTTATATAAGCAAATAAAAGCTGCCTTTTGCATGTAAAGGTAAGACATTTTCCACTAAAAGTACGACAAAGAACAGCTAAAGTTTCTCCAGAGTTCACTAGAGGAAGAAATCAGACCTACACATGTTTTTAGCTGATATGTATCAAATCCGCCTCCAGTGACATATGCGTCATGTGACGAGCCTACACCTGACATACTCTTGCTTAACAGACAGAAAGAAAGCAGTTTAAGATCTTCTCAATGGAAAGCTGTCCCATGTGCTCTGTGAGAAGTTGGGCTTCCATGTGTCTTTAAAGGTCAAACATCTATGAAGATCCTCCAGGACACGACAGCTGCTCTATATCTTTGACTCTCCTGTGGTCTGATCGCTCCGTAGAGGTCGCTGACTGTTGCTGGACAGATTGGTGCTGAATTCTGAATATTTCTTCTCCTTATGTGAGCAGATCCTACTAATCAGCTTGCAATACTCCTCTCTGACCGGTTTGGAGAGCAGGCAGTGCATAATGAAGATGAGCGCCCCCTGGAGGCTGTTGAGGATGGTGAAGAGGTACAATAAAACCTGAGTTCCTTCATGCTGGAAGAGGAAACAGCCAAAAACCCACATCCCTCCAAGAACACACAACTGAGCCACTGCGGTCACCGTGAAACCCCTGATGTTGCGGAGATTGGAGAGGTCCGGGTTGAGGCTGGAGAACTTCTCGGCCAGTTTCCACACGGTGATGACGAAAACAAAGCTGTTGAGGACGACGATGATGCAGACGGGCGCGAAGAAACTCCACATAAATTCAAGAGAGAGCCAACAGTGTCGATCAGTGCCGTATCCCCGCGGATAAGAGATGGCAGAGATAATGACGATGGCAAGAGGGACTCCATATCCCACAGCATACATATAGAGATGTTTTAATGTGGTGTGAAACACCAGCACAACCATCCGGTAGAGCTGAACCCCCTCCAGCAGCATCCAGCAGAACGCAGACAAGAAGAAGAAATGAAGCAGGCCGGCCACAATCGCACACGCTACCCTGTTGTGAGTGCTGGAGATCCCACAGAGGAAGACGAGGTCTGCGATGAAGAGGCACACGCACAGGTGAAGATGAATGCTGTTTCGGGTTCCTTGGATTGAGCGGCAGAACCGGAACGTCAGGATACATAGAAATAAACAGACCAGAGACAGAACTAAACCCACACGTGTGATCAACACCAGCTCAAACGTGTCCTGTACGGGATAAAGGGCCATCAGCACAGCGAAGCTACTGAGATGAGAGCAGGAACAGCCTGTATGAGTGCTGTTAGACCACGCCCTCTCACAGCCCCGCCCAGACCACACCCCCTCAGCCTCATTCCAGAACACACAGGAGTAAACCACGCTCCCAGATTCCGCTCTCTCCTCCGTGTGCGTAAAGACGAGCGTCACCGGCTCAGGCAGTTGTTTGGTTTCTGGATTACTGACGACGGCTGTCGCCACCTTTGAGTTGAGCTGATAAGTGACATGTTTCTTCTTCACATCAGATCTCTCTCTGCTCTCCTGCTCCTGTGATGTTCTGCTGATCTTGTGGAACTGATGGCTGGATGAGTCCAGATCTTTATAACTGACCAGCGCCACAAATGCAAAACCTGGATATGATTTCCCTACAACTGTTTCCCAGCTGGTGTTGAAGAGGGCGGAGTCTGTGCTCAGAATGACACTCCCAGTGGGCGGAGTCTGATTCCGTGTGACTGCAACCTCAGCGAAGGTGTTGTGCGTCTCCATCCTGGTCACAGGCTCTTTAAGCTGAGGTCCGATCAGACGCATGCTGTTCTCCACCGTGTCCAGAAACTGACTCAACGTCTCACCATCAGTGATGTTTCCATCCAACAGCAGCTCGTCGGTGGAGGTGAACAGGTTCTCCAGTAACTCTTCGCCGGCTTGACGGCCTCCATCTGGACCACTCAGAGACTCACAGCTCTTCCTCAACTGCGTCAGTAAATGCTTCAACTTTTCCTCCATATCAGCCTCTATTTTAAACTCGTCACAGTTCATCTTGATGCATTTTGACGGGTCATTGCCGTAGTTACTGTAACCCTGGTGACATTTGCATCTATAGCTGCCTGGTCGATTGATGCATTCAGCGTTTGTGCCGCAAATACCTGGATCTTTACATTCATTGATGTCTGCACATGGTGAGTCTGTTCTTCCAGAATCATAATATCCTTGATGACACGAGCAATTGTAGGAGCCAATGGTGTTCACACACACCATATCACCTGAGCATACAAATGTCTTCTCAAAACACTCATTGATATCCTCACACTGTCCTGTTGTTGCTGTGAAATTGGGTGTTTGTGATTGAAACCCTTTATTACAGGTGCAGTAGTAACTCCCATGTGTATTGAAACACTGAGCGTTATCACCACACAGACTCGGACTCACACACTCATCTTCATCAACACAGGTCTTGTTTATTTTTTTGAATCCATCCTCACATTCACGAGACTCACTACACAGCAGGAAGAAACCCAAAAGTAGAAGTGCCCACTTAAGCTCCATGTTAGGAAGCATGCTGTCAGATTGCAGTCTGTTTATGATATGAAATTCCCAAAGGAAATCTGTATTCCAGTAAGGCGTCGGAGATTTCCCGTCAGTCTGACTTTCACTTAAGCTCCTGAAGCGGTTTGAAATCTCTCTCCTTCAGTTAACGCGGTCTCCTCTGTCAGATAAGAAGCTCTTCTGGAATATTTTTCAAAAGTTTCCAGTCAGTTTTCCAGATGATTCCTCCTCGGGTTCGTCTCGTCTTTCTGCTTTGTTTGTCTTAATCCACGCCGTCTGAGAGTTTCCACTATTATTTCATCTTTTTTTCCACAGGCCTCGTCCGTTATATTCCTCCTTCACTCTTCAGATGTGTGTGCCGCTAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU426890 lncRNA upstream 1662 50543 ~ 68231 (-) True G373723
TU426907 lncRNA upstream 43910 92791 ~ 93175 (-) True G373733
TU426942 lncRNA upstream 91301 140182 ~ 140538 (-) False G373759
TU426944 lncRNA upstream 91301 140182 ~ 140746 (-) True G373759
CI01000176_00007025_00017149.mRNA mRNA downstream 14448 6744 ~ 17299 (-) True CI01000176_00007025_00017149
CI01000176_00062378_00087326.mRNA mRNA upstream 13419 62300 ~ 88846 (-) False CI01000176_00062378_00087326
TU426905 other upstream 6076 54957 ~ 65835 (-) True G373731
TU426896 other upstream 13198 62079 ~ 62201 (-) False G373724
TU426897 other upstream 13198 62079 ~ 63067 (-) False G373724
TU426898 other upstream 13198 62079 ~ 85063 (-) True G373724

Expression Profile