RNA id: TU427007


Basic Information

Item Value
RNA id TU427007
length 1108
RNA type TUCP
GC content 0.39
exon number 4
gene id CI01000177_00133004_00135222
representative True

Chromosome Information

Item Value
chromosome id CI01000177
NCBI id null
chromosome length 204033
location 132908 ~ 135890 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CCGGTGCTGCTCCGCTGTAAACAAAAAGTGTCTGTGAGACGGACGCTCCGCTGATTTTAGGGACAATTTTATTTCTCTCATTTATTATCTCTTCAGGTATGTCTTACAAACCCAATCCCCATCAACACCTTCCGGGAACTTCTGGGAACCAAGGAAACATTCCTTCTCCATCTTCCATGGCAACAATACAGTCATTTAAGCCAATTCTTAATGACTTCGGACCACCGTCACTGGGATTCCCACAGGGTCCAAATGGAAACCAAGTACCTCAGAGTAAATATGCTGAACTCCTCGCCATCATTGAAGAACTTGGGAAAGAAATAAGGCCAACATATGCAGGGAGTAAAAGCGCCATGGAGCGACTTAAAAGAGGTATCATTCATGCCAGAGGGCTTGTTCGGGAGTGTCTGGCAGAGACAGAAAGAAACGCGAGATCCTAGCGCCTCCTTCCTCATTCTCTCCATACGGGCTGAAAGAACTGTGTCTTCTTATACCGTCACACGGGAATCATGCATGCCTTTCCTTTGAGGGGGATAAACAATCAACAAGTGGAGCATTTATGTTACGAGTTGCGCTTTTCATCTGTGGTTTGGAGGGAATAAGGCACGACACAGAGAATATATCTTCTGATTTATAAATGCAAGAGATCTGGAACTGTTGCCATTTGAGTTGTTTTTATATATTTCATTTTCTTTGACCACATAGTATCTTTAAGAACAAATAAGCAAAAATGCATGCAATCGGTTTAAAGGTCCCACATTAGAATCTGCATGGCTTTTACAGGTTAGACTAGGTATGTGCTTTTAGAAATAGGTCTCAGGATAATAAGGTATTTTCTCCTCGGACACACAATTTTCTTTTAATTGGGGAGATACTGAAAAGTATTATAGTGATGCCATTACTTTCGTCTTTATTTGTATTTATTACCTTGTGTAATACAATGTATTTTCATGTAAAGACAAAAAAGGTCACTCTTTGGAATTTTGTATAACTGTCAATAAATATGACATTCATTGTGTATGAAATGTTTTTGTTTATTGTCTTGCAAAAGACTTGCATTGTACAATATTACTATCCTTACGTAAATATAACATGGTAACGGTTTCCA

Function

GO:

id name namespace
GO:0070182 DNA polymerase binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU426989 lncRNA upstream 64056 17574 ~ 68852 (+) True G373782
CI01000177_00119283_00126859.mRNA mRNA upstream 6049 119283 ~ 126859 (+) True CI01000177_00119283_00126859
CI01000177_00081319_00089885.mRNA mRNA upstream 43023 81319 ~ 89885 (+) True CI01000177_00081319_00089885
CI01000177_00061966_00080120.mRNA mRNA upstream 52788 61966 ~ 80120 (+) True CI01000177_00061966_00080120
CI01000177_00050469_00056013.mRNA mRNA upstream 76726 50469 ~ 56182 (+) True CI01000177_00050469_00056013
CI01000177_00156585_00162274.mRNA mRNA downstream 20695 156585 ~ 162274 (+) True CI01000177_00156585_00162274
CI01000177_00184252_00189231.mRNA mRNA downstream 48180 184070 ~ 189619 (+) True CI01000177_00184252_00189231
CI01000177_00198200_00203950.mRNA mRNA downstream 62310 198200 ~ 203950 (+) True CI01000177_00198200_00203950
TU426980 other upstream 21915 106764 ~ 110993 (+) True G373775

Expression Profile