RNA id: TCONS_00018503


Basic Information

Item Value
RNA id TCONS_00018503
length 3954
RNA type mRNA
GC content 0.41
exon number 12
gene id XLOC_009412
representative False

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 36329368 ~ 36347895 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTTTGTCTTTAGATCTATCCACAGGATATACCACAGAAACCAAACTCCAACATACAGGCCGCTGCAGAGACTGGTCAATAGGGCTGAAAAAACTCTGGATCCCCAAAGTGATGCTCCATTCAAGCAAGTGAGAGACAAAGTTTGGAGACAAAGGACCCTAGGAACACGAGTATAAACAATCTCAATGGAGACGGAGGGTCCAGACTCACCAGAGCCAAGCTGTGTGTCCTTAAGAAGTGACCATTCAAAAGCACATCATGTGCTCTTCAAGGATGAAGACCCCTTTGAATACAGCTCAGGGCAGACAGGTAGATCTTCTCCAACTCCCAGCCATGTGTCCTTGGCCAGTAATATGTCAATCAATCAGCCTTTGGAATTTAAATCATGCagTAATACCTTACTGCTGAAAGAAATTCAAGAAGCAATCCAATCAGTCCTAAGGATAAGGTTTCAGTGTTTGCATGAAGGATTATCAAAACACAGTGTCCTCATACCTCTCAATGACATCTACACTGAGCTCTACATTACAGAAGGGGAAGGTGGAGAGCTTAATAATGAACATGAGATCAGATGGATTGAAACAGCCTGTAGGAGGGCATTGACAGAGGACAGACCAGTTAACCTGAATGATATCTTCAAACCATTACATGGACAAGACCGACCCATCAGAACTGTGCTGACTAAAGGAGTCGCTGGCATTGGAAAAACAGtttctgtgcagaagttcatcaTAGACTGGGCTGAAGGAGAAGCAAATCAGGACATATGGTTCATTTTCCCACTTCCTTTCAGAGAGCTCAATTTGCTGAAGGACCAATCATTCAGTCTTAAAGGTCTCCTCCAGTATTTCATGAACATAGAACTTGATATCTCTTTACATGAAGGTAAGAtcatgttcatctttgatggtttGGATGAGTGTCGTCTGCCTCTGGATTTTCACAACAATGTGAAGTTGTGTGATGTGACTGAATCAGCTTCAGTAGATGTGCTACTGACGAACATCATTAGAGGGAATCTGCTTCCCTCTTCTCtaatctggatcacctccagaccagcagcagcagaTGTTGTCCCCTCTAAGTGTATACATCGAGTGACAGAGGTACGAGGCTTCAGTGACCCTCAAAAAGAGGAATACATCAGGAAGAAAGTCAGTGATCAGACTCTGTCTGACAGAATCATCTCACACCTGAAGTCATCCAGGAGCCTctacatcatgtgccacatcccagtgttCTGCTGGATCTCAGCTACTGTTCTGAAGAAGATGCTGAGTGAAGCAGAGAGTGCAGAGATCCCCAACACTCTCACTCAGATGTACACACAATTCCTGATGCTTCAACTAAGAATAAAAAATGAGAAGGCCTATGATAAGAAGAGTAGCGATATAGACATAGTTCTCAAACTGGGGGAATTAGCTTTTCAGCAGCTAGAGAAACTCAATCTGATTTTCTACAAGGAAGATCTTCGAGAGTATGGCATTGATGAGCAAGAAGCATCTGTGTACTCGGGACTGTTCAGAGAGGAATCAGGAATGTTTCAGGGCAAAGTCTACAGCTTTGTTCATCTGAGTGTTCAGGAACATCTTGCAGCTTTATATGTGTACCTTTATTTTGTGaatgaaaacataaacaaattaaaccAACCAAATTTTCTAACTAGCATCCTAAAATGTGTTCCAACTGTATTTGATGTCTATCAGACAGCTGTGAAAAAAGCTCTGCAGAGTACCTCTGGAcatctggatctgtttcttcgctttCTACTGGGTttctcactggagtccaatcagaatCTCTTAGGAGACCTACAGGTGCAGACAGAAAGCAGCTCTGACAGCAGAGAGCAAATAGTTGGGTTCATAAAGGAGAAGATCAAAGAGAGTCCTCCTCCAGAGAAGATGATCAATCTGTTCCACTGCCTGAATGAGCTGAATGATCATTCCCTAGTGGAGGAGATACAGGATTTTCTACAATCAGAGTCTAGAATAAATATGAAACTCACAGCTTCACAGTGGTCAGCAATGGTCTTTGTATTGCTGACTTCAGGACAGAAACTAGATGTTTTTGATTTAAACAAATACATCGGAACTTACATCTTGCCAGATGAAAGTCTTCAAAGGCTACAACCAGTGCTTGCAGCATCCAGAACCGCAAAGCTTTGTGAGCATAACCTGACAAAGAGAGGCTATAGTGTTTTAGTGTCTGTTCTTACCTCCAAAACTTCATGCCTAAGAGAGTTAAACCTGACTAGGAGTGCTGTAAATGATTCAGGATTAAAACTGCTATGTTCTGGGCTGGAAAATCCTCAATGTAAGCTGGAAACACTGAGactgGAGTTTTGTGGTGTTTCTGATAAAGGTTGTGACTTTCTGgcatcagctctgagatcaaaccccTCACATCTGAAAGCACTGGATCTCTCTGGAAATACATTGAATTTCACTGGATTGAAAAATCTTTTGGCTGAATTTCAGAAGCCTCATTGTAAACTTCAGAGACTGTGTTTGAGACTTTGTGGTCTCACAGATGTAGGTTGTGATGCTCTGGCTTCAGTTCTGAGATCAGACCCCTCACACCTGACAGAGCTGAATCTGTCTGGAAATAAACTAGGGGATTTGGGAATGAAGCTGCTCGCTGGCGGACTTCAGAATCCTCACTGTAAACTACAGATATTGAGGTTGGGAGACTGTAGTATTACTCATGAAGGCTGTGCagctctggcttcagctctgagatcaaacccctcacacctgagagaactgGATTTGTCTGGGAATAAACTCAATAACGCTGGTGTACAGATCCTGTCTGGTGAACTGGAAAATCCTGACTGTAATCTTGAGATACTCAGGTTAGAGAATTGTGATGTCGGCGAAGAGGGGTGTGCTGCTCTGGCTGAAGCTTTAAAATCAAATCCTTTAACTCTGAAAGAGCTGGATCTATGCTGGAATAAACTGGGAAACTCAGGGGTGCAGCGACTTTGTACTTCATTGGAGAATCCAAACTGTACATTGGGAGTTTTACGACTGACAGGCTGCAACATATCAGAGAATGGCTGTGCAGCTCTGGCTTCAGTATTAAGATCAAACCCCTCATATCTCAGAGATCTGGATCTTTCTCATAATGATCTGAGAAGCTCAGGGGTGAGATTGCTCTCTAGTGCTCTAGAGAAGCCTGATTGTAAACTGGAGATACTACGTTTGGAATATTGTAAAATCACAGATGATGGTTGTGCTGTTCTGGCATCAGCGTTGAAATCGAatccctcacacctgagagagctatATCTGTACATGAACTCTTTTAATTTAACAGCTTCGGGAAGACAgctgttgtctaaaataaaagatGATCCACACTATAAACTACAGACACTGCATTatgaatcacattttttttgctaaataagtATTTGTCTGTACAGAAAGTGACATGCATGTCTGAAATGAAAAGAGACTGATTTAGACCTTTCACTCCAGCTTTATTAAGTCATCTGAAATGAATTGAATATTGTTTGACTGATTTTACAGTAAGTTTACACTGGCTTTCTCCAGTGACttactgtcatttttttacataatttttcttGTCATGTGgatgcaggaaaaaaaaacatgatgcagTGTTTAACATGAATGTTTCACATGACAACAAGGTACTTTGACTTGACCAATGTCTGTATTTTATTGTTAAGTgtattgctttttgttttgtatttttctatttctggagcaatattgtttttgtttttttgtggaaGTACAAGCTGCcccttaattattaataatagtaatttacagtactttttattaaataatttttataaaagtgTAACAGATACTATGAAAATGACCATACCTACGGTTACTGTAACAAATGCATAGTTAATTTTGTTTATCATCAATGTAtacaaagagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg

Function

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process
GO:0005524 ATP binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-131122-52 Predicted to be involved in intracellular signal transduction.

Ensembl:

ensembl_id ENSDART00000155274

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00019215 lncRNA downstream 442995 35761681 ~ 35886373 (-) False XLOC_009407
TCONS_00019217 lncRNA downstream 443170 35864583 ~ 35886198 (-) False XLOC_009407
TCONS_00018838 lncRNA downstream 443397 35874897 ~ 35885971 (-) True XLOC_009407
TCONS_00019216 lncRNA downstream 443475 35864583 ~ 35885893 (-) False XLOC_009407
TCONS_00018498 lncRNA downstream 548563 35780040 ~ 35780805 (-) True XLOC_009408
TCONS_00018510 lncRNA upstream 17866 36365724 ~ 36369686 (-) True XLOC_009414
TCONS_00018839 lncRNA upstream 73733 36421591 ~ 36437846 (-) True XLOC_009415
TCONS_00019218 lncRNA upstream 152348 36500206 ~ 36503189 (-) True XLOC_009416
TCONS_00018840 lncRNA upstream 436621 36784479 ~ 36784773 (-) True XLOC_009419
TCONS_00018519 lncRNA upstream 911496 37259354 ~ 37264265 (-) True XLOC_009422
TCONS_00018502 mRNA downstream 80281 36228835 ~ 36249087 (-) True XLOC_009411
TCONS_00018500 mRNA downstream 273967 35951888 ~ 36055401 (-) False XLOC_009410
TCONS_00018501 mRNA downstream 369118 35956842 ~ 35960250 (-) True XLOC_009410
TCONS_00018499 mRNA downstream 399298 35888549 ~ 35930070 (-) True XLOC_009409
TCONS_00018495 mRNA downstream 918508 35403080 ~ 35410860 (-) True XLOC_009403
TCONS_00018505 mRNA upstream 1151 36349009 ~ 36352983 (-) False XLOC_009413
TCONS_00018506 mRNA upstream 3361 36351219 ~ 36357889 (-) False XLOC_009413
TCONS_00018507 mRNA upstream 5222 36353080 ~ 36356264 (-) True XLOC_009413
TCONS_00018508 mRNA upstream 10286 36358144 ~ 36369743 (-) False XLOC_009414
TCONS_00018509 mRNA upstream 10306 36358164 ~ 36365840 (-) False XLOC_009414
TCONS_00018488 other downstream 1117131 35167295 ~ 35212237 (-) True XLOC_009400
TCONS_00018481 other downstream 1216582 35095205 ~ 35112786 (-) False XLOC_009398
TCONS_00018452 other downstream 2049833 34279421 ~ 34279535 (-) True XLOC_009383
TCONS_00018421 other downstream 2595262 33706680 ~ 33734106 (-) True XLOC_009372
TCONS_00018418 other downstream 2666196 33663055 ~ 33663172 (-) True XLOC_009370
TCONS_00018513 other upstream 181607 36529465 ~ 36533247 (-) True XLOC_009417
TCONS_00018517 other upstream 526393 36874251 ~ 36874366 (-) True XLOC_009420
TCONS_00018535 other upstream 1379976 37727834 ~ 37729166 (-) True XLOC_009432
TCONS_00018590 other upstream 3721153 40069011 ~ 40069127 (-) True XLOC_009467
TCONS_00018622 other upstream 5045543 41393401 ~ 41396073 (-) True XLOC_009478

Expression Profile

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