RNA id: TCONS_00018840


Basic Information

Item Value
RNA id TCONS_00018840
length 220
lncRNA type intronic
GC content 0.34
exon number 2
gene id XLOC_009419
representative True

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 36784479 ~ 36784773 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CCTCTTTTAATTAGAAAGAGAAAGGAAAATTTTTTTATCACAATCTCATTAGGAAGAAGAATACAGAGGTGCAGGATGGAgGGGATGTTTATATGAAGggccaaatatcattgagagctgtgggttgaaggtaaatataccaaactacagttaaaacttataatttttgttttattgtcctGGTCCAAATAACACAAGAGAACTGAACTGAAAACACCAC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00019218 lncRNA downstream 281290 36500206 ~ 36503189 (-) True XLOC_009416
TCONS_00018839 lncRNA downstream 346633 36421591 ~ 36437846 (-) True XLOC_009415
TCONS_00018510 lncRNA downstream 414793 36365724 ~ 36369686 (-) True XLOC_009414
TCONS_00019217 lncRNA downstream 898281 35864583 ~ 35886198 (-) False XLOC_009407
TCONS_00018838 lncRNA downstream 898508 35874897 ~ 35885971 (-) True XLOC_009407
TCONS_00018519 lncRNA upstream 474581 37259354 ~ 37264265 (-) True XLOC_009422
TCONS_00019219 lncRNA upstream 946282 37731055 ~ 37733875 (-) True XLOC_009433
TCONS_00018545 lncRNA upstream 1042612 37827385 ~ 37829157 (-) True XLOC_009441
TCONS_00018553 lncRNA upstream 1091943 37876716 ~ 37880887 (-) False XLOC_009444
TCONS_00018552 lncRNA upstream 1091943 37876716 ~ 37880887 (-) True XLOC_009444
TCONS_00018516 mRNA downstream 57017 36556503 ~ 36727462 (-) True XLOC_009418
TCONS_00018515 mRNA downstream 123690 36556503 ~ 36660789 (-) False XLOC_009418
TCONS_00018511 mRNA downstream 251042 36506014 ~ 36533437 (-) False XLOC_009417
TCONS_00018512 mRNA downstream 251157 36506134 ~ 36533322 (-) False XLOC_009417
TCONS_00018508 mRNA downstream 414736 36358144 ~ 36369743 (-) False XLOC_009414
TCONS_00018518 mRNA upstream 237245 37022018 ~ 37104165 (-) True XLOC_009421
TCONS_00018520 mRNA upstream 634779 37419552 ~ 37436082 (-) False XLOC_009423
TCONS_00018521 mRNA upstream 635197 37419970 ~ 37425468 (-) True XLOC_009423
TCONS_00018522 mRNA upstream 672236 37457009 ~ 37543839 (-) False XLOC_009424
TCONS_00018523 mRNA upstream 676010 37460783 ~ 37543591 (-) True XLOC_009424
TCONS_00018513 other downstream 251232 36529465 ~ 36533247 (-) True XLOC_009417
TCONS_00018488 other downstream 1572242 35167295 ~ 35212237 (-) True XLOC_009400
TCONS_00018481 other downstream 1671693 35095205 ~ 35112786 (-) False XLOC_009398
TCONS_00018452 other downstream 2504944 34279421 ~ 34279535 (-) True XLOC_009383
TCONS_00018421 other downstream 3050373 33706680 ~ 33734106 (-) True XLOC_009372
TCONS_00018517 other upstream 89478 36874251 ~ 36874366 (-) True XLOC_009420
TCONS_00018535 other upstream 943061 37727834 ~ 37729166 (-) True XLOC_009432
TCONS_00018590 other upstream 3284238 40069011 ~ 40069127 (-) True XLOC_009467
TCONS_00018622 other upstream 4608628 41393401 ~ 41396073 (-) True XLOC_009478
TCONS_00018633 other upstream 4744487 41529260 ~ 41543440 (-) True XLOC_009482

Expression Profile

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