RNA id: TCONS_00018519


Basic Information

Item Value
RNA id TCONS_00018519
length 4613
lncRNA type lincRNA
GC content 0.33
exon number 3
gene id XLOC_009422
representative True

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 37259354 ~ 37264265 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

gactgtctattatgttttctttgtgtatgtggacACGAATAAAGTCataccaattatttttatttacataatttgagttcagaagcagaaataataataatgactgaaatgggaaaccatatttgtgaaattcagtaggtggcgataatgctaagGAGTTTGTTggttaccatatatggtttgaCTAAATCGTGTGTGCTAGAATGTGTGCCTAAAACTTGTGTGGTTCTGCggttctgcagctggatatatctcgttgagtctgcagccagacagTTGCAGTCAGCTATATTATCGGATAAAGAAAAATGCTTTTTGAAACATTGGTATTAGTGTACTTTTTGGGACTTGGATTTGCAGTAGTGCATAGAAGCCAAGGTTCCCTCTACACGAAATACGAAGTGGGTGATTCAGCTACTCTCTATTGCAACGTTAGCACAGATGAAGAAGTCGTAAACAGCTGCACATTTTTGTGGGAAATTACCGACGAACTTAAGAATGACTTCATAGATATCACAACCACGCCGAAATATCACAACAGAGTCAGTGTGGCATCCCAAGACCTTTCAAGCATGATGACCATACGAGATCTGGCGGACACCGACACAGACGAGATAATGTGCACACCATTGTGTTATATTTATGATGATCTTCGTTACATCTTGGGTAACGGGACAACTCTAAAAATAACAGaacaagaaaagaaaataaaggaacAAGAAAATTTGGGATTTCCATGGCTGAAGTACCTCATATTCTCACTCAATTGTATAATTTTCAGCATTTCAATGGTAATCTGTATCTATATTATTCGAAAACGGCGTTTTGGGAAATGTGCCCAAAACGAATAATAATGCACTTTTAAACAATTCTCATGCCTAAATCTAAATGGTTAGGCGTTAATTTCATTCAACTAAAATTGACGAGATCAAATGATTTCGAAAGTGAAAgcattttaaactaaacaaaggtggggttatttttttttctaaatgttgacGAGGTTTATTAATTCGATTAACATTTAGCAATAAAGCAGTCAAACTCAAACTATCACAAAGGTGTTTAGTTTAGGCTATTTTGCTTTGCTGTTTATTTTGACGCAGTTTATTGTTTCGATTTAGATTTACCAGTTATGCACTATATGCTATAATCAACTGATTTTTAAACACCTTGTCTTCGTAAGGAAGTAGGcctatataaatgtaatgtaatatcgtgtcaaaatattttcttaaaaaagTCATAGCTGAAATAATCCGTTTCCAGCCATTTTAAGTCAAAATGTAACAAGCTCTCTTTAAATATAGCTTtgccatatacagtatataaaatgtttttaaatctgtAATACTTAATATTTACGTATGTAcgacaatttttatttaaaaaaaaattggattaaaGGTCAGAAAAAACAAGTCTTGAGCCAGAAAAACAACTTACCAGTCGTTTTGCAATTCCATAAATGAAAGTGTTTACCTTATAGGTCGATTTTTCCTTTACAGGTCGATTTTTTTCTATAAATAGGAGGGACCAGGTTCTCAGATTACACCTGTGTGTGAAGATTGGATTGTTCTCTTCCATCAATCTTTGacaacaaaaactgaaaatatgtataaaatatgtatttaacattATTACAAATACATTTTCAAGTATCtcacttcatttgttttattaattttaattctcaagtatataaaaaatgtaataatagagAATTTTCTGTCAGGGCATTTTCCAATAACTGTACAAGCAACACCACTGTAAAAGTAAACAATATGTAGAGAATATTtgaaatacaaataaagtttttacagtttacagtactttttatataatcatgcattatttaaaaaaaaaaaaaaatatatatatatatatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatatatatatatatatatatatatatatatatatataattatttaaaatatttatttaaatctaatatatataattattaaatctatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatataatgtgcatTGGCAAAATGTGACAAACCACTCCACTGTGGGAAGAAAAATAGCAGGGttatttagatttaaataaatatttttaaaaaaaattcactttcCATATGTTCCCATTTTTATATcatttgaagcttttttttttttacaagtgacaataattttaaaactgttaGACTGGCtattgtgtactgtgtatattatgGATCATACACAcaggcgtcatggtggcacagtgggtagcaagattcgagcatcggctgggtcagttggcatttctatgtcgagattgcatgttctccccgtgttggcgtgggtttcctccgggtgctccggtttccccccagtttttttaaagtgtaaaaatcaagagaaattaaaatatataactatttgttgaaattttttagttttaacaatttgtttaaattaaaatgttctatctttaaatttctaaatgttcggtgactaaaatataagtttataaatacatctgtttaggtgacgcagtggcgcagtaggtagtgctgtcgcctcacagcaagaaggtcgctaaatcaagcctctgctgggtcagttgccgtttctgtgtggagtttgcatgttctccctgtgttcacgtgggtttcctccgggtgctctggtttcccccacagtccaaagacatgcggtacaggtgaattgggtaagctaaattgtccgtagtgtatgagtgtgaatgagtgtgtatggttgtttcccagagatgggttgtggctggatgggcatccactgcgtaaaacaaatgctggataagttggaaggtcactccgctgtggcgaccctggattgataaagggactgagccaaaaagaaaatgaatgaatgtatgaatatatctgtttacatgcctatattcactgaaaaatggataaaaatattcatttttaaaatggggtgtactctattaagctgagcactgtatgcacatttatatatgtactgtatgcaaaaaaaaaaaaggtttgtgcaGTTCTATTTGAATGTATGTGTAAATATAATGAAGATACTGtataatgcacaaataaaataataaagtaaaatatataatgcacacacatcaaaacaaacttttgtttttgtgtatgtgtgtaaatgaaattgtatgggtgtttcccagttataggttgcagctggaagggcatccaaagCTCAAAACATGtcttggataagttggtggttcattctgctgtggcgaccccagattaataaagagactaagccaaaggaaaatgtatgaaCAAAAAATTGCGATTAATCTTTGCCAggcacttggaaaaaaaaaaacatttttaaaaaactcaaaatgtttCTGTGCCTCTATAGATTTATGTTTGTATGGGATGTTTTTACCACAATAACTGCTAGCACGGAGTCTAATATAGATGCTGATAAGTTAAGGTTTAAATTGTAAATCAatcttttcagaaatgtattAACTTGTAATGTTTTTCATAGGTTTAAAAGCACAATTGCACTGATATGTTAGGAgagaggggggtggggggtggcaCTATGCTCAGTGGttactgctgtcgcctcacagcaagaaggtcgctggttcgagccttaactgggtcagttggcatttctgtgtagagtttgcatgttctccctatgttcgtgtGCGTTTTGTacgggtgctccgattttccccacagtacaaagacatgcactaaaggtaaattgagtaaactaaattgatAGTAtaagagtgtgtttcccagtactgggttgtggctggaagtccatctgctgcataaaaataaatgaaagttgtGGTCAGATGTCTCACTCAGTATGCAAAGATCTTGTGCATTGAGAAGCTTGTTTTTTTACAGTTGCCCCAAAAATTATCATGTTAAAAATTATGCTGTTTTTGGCAACTATACAGTGCACTGATATACGACATTAGGCATAACCAGAGATTGAGCTGATGGAACATTTAGAAAGTATTTCCTGTCTATATATGTACTTTCATGTCAGCTAAGACATCTTCTTTCATGCCAAAATATATATGAGGTTTTAATTacaaatgtttaacatttaaaagGGATTATGTTTACTCAGACGTGTTGCTATGGCTATAGAAAGAAATGCTCACTTAATTATATGCTATGTGTATGgatgaaatgttaaatattaacaacATCATATAGGCTAGTTAGCATGCCTTGAAAAGTTTTTGCAACATCATTGCATCCTGCCACAATACCCCATAAGCTCTATCTGTTTTTGTGTTTCTTAACCACAGCACAGAactcaaaataatatttaaagtgaTGATGAATGATACcattcttattttaaaacatgattaaagtaACTTCTTGATAGACCTGTAAACTTGAGATTATCAGTGTAAATTGTACTCTTTATTGTGAACTGCAAATTAGGTgtgttttaaagttaaaaaaagctTGTACTTCCTGTTTTTATGCTTTGTTTAAAAGCAACCctgctcaaataaaaaaataaaatgaa

Function

GO:

id name namespace
GO:0016070 RNA metabolic process biological_process
GO:0006323 DNA packaging biological_process
GO:0006325 chromatin organization biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:0007049 cell cycle biological_process
GO:0051276 chromosome organization biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0044422 obsolete organelle part cellular_component
GO:0044424 obsolete intracellular part cellular_component
GO:0044428 obsolete nuclear part cellular_component
GO:0070013 intracellular organelle lumen cellular_component
GO:0044446 obsolete intracellular organelle part cellular_component
GO:0044451 obsolete nucleoplasm part cellular_component
GO:0032991 protein-containing complex cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0005634 nucleus cellular_component
GO:0005654 nucleoplasm cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0031974 membrane-enclosed lumen cellular_component
GO:0031981 nuclear lumen cellular_component
GO:0043226 organelle cellular_component
GO:0043227 membrane-bounded organelle cellular_component
GO:0043229 intracellular organelle cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0043233 organelle lumen cellular_component
GO:0003712 transcription coregulator activity molecular_function

KEGG: NA

Ensembl:

ensembl_id ENSDART00000194958

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00018840 lncRNA downstream 474581 36784479 ~ 36784773 (-) True XLOC_009419
TCONS_00019218 lncRNA downstream 756165 36500206 ~ 36503189 (-) True XLOC_009416
TCONS_00018839 lncRNA downstream 821508 36421591 ~ 36437846 (-) True XLOC_009415
TCONS_00018510 lncRNA downstream 889668 36365724 ~ 36369686 (-) True XLOC_009414
TCONS_00019217 lncRNA downstream 1373156 35864583 ~ 35886198 (-) False XLOC_009407
TCONS_00019219 lncRNA upstream 466790 37731055 ~ 37733875 (-) True XLOC_009433
TCONS_00018545 lncRNA upstream 563120 37827385 ~ 37829157 (-) True XLOC_009441
TCONS_00018553 lncRNA upstream 612451 37876716 ~ 37880887 (-) False XLOC_009444
TCONS_00018552 lncRNA upstream 612451 37876716 ~ 37880887 (-) True XLOC_009444
TCONS_00019220 lncRNA upstream 1031892 38296157 ~ 38297734 (-) True XLOC_009453
TCONS_00018518 mRNA downstream 155189 37022018 ~ 37104165 (-) True XLOC_009421
TCONS_00018514 mRNA downstream 319699 36553823 ~ 36939655 (-) False XLOC_009418
TCONS_00018516 mRNA downstream 531892 36556503 ~ 36727462 (-) True XLOC_009418
TCONS_00018515 mRNA downstream 598565 36556503 ~ 36660789 (-) False XLOC_009418
TCONS_00018511 mRNA downstream 725917 36506014 ~ 36533437 (-) False XLOC_009417
TCONS_00018520 mRNA upstream 155287 37419552 ~ 37436082 (-) False XLOC_009423
TCONS_00018521 mRNA upstream 155705 37419970 ~ 37425468 (-) True XLOC_009423
TCONS_00018522 mRNA upstream 192744 37457009 ~ 37543839 (-) False XLOC_009424
TCONS_00018523 mRNA upstream 196518 37460783 ~ 37543591 (-) True XLOC_009424
TCONS_00018524 mRNA upstream 298317 37562582 ~ 37589600 (-) True XLOC_009425
TCONS_00018517 other downstream 384988 36874251 ~ 36874366 (-) True XLOC_009420
TCONS_00018513 other downstream 726107 36529465 ~ 36533247 (-) True XLOC_009417
TCONS_00018488 other downstream 2047117 35167295 ~ 35212237 (-) True XLOC_009400
TCONS_00018481 other downstream 2146568 35095205 ~ 35112786 (-) False XLOC_009398
TCONS_00018452 other downstream 2979819 34279421 ~ 34279535 (-) True XLOC_009383
TCONS_00018535 other upstream 463569 37727834 ~ 37729166 (-) True XLOC_009432
TCONS_00018590 other upstream 2804746 40069011 ~ 40069127 (-) True XLOC_009467
TCONS_00018622 other upstream 4129136 41393401 ~ 41396073 (-) True XLOC_009478
TCONS_00018633 other upstream 4264995 41529260 ~ 41543440 (-) True XLOC_009482
TCONS_00018660 other upstream 5013408 42277673 ~ 42283815 (-) True XLOC_009502

Expression Profile

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