RNA id: TCONS_00018521


Basic Information

Item Value
RNA id TCONS_00018521
length 1542
RNA type mRNA
GC content 0.51
exon number 2
gene id XLOC_009423
representative True

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 37419552 ~ 37436082 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATTCTCCCTCAAAGTGGCAATCAATCAAATTCAACAGGTGACTACTCCCTTCCTCTGCCGGACATCATGCAGAGTGAGGCCTCCAACCCCTATGTGTCCATACGCCGCCACAAGAGCACCACAGATCTGCCATACAGCCCACAGCGTGGGTACTTGCGTGGACAGAGAACTAGTATCTGCGCCCCCACCGAGGCCGAGCTGGCAATGATGAGGCGTTGCTCTTTACGTGATCCGAACGTTCGTCCATGTTGCCGACATGCTCTTAGCGTTCCCAATATGACCAGTCCAAGCGCTAGCCCTCTGTACAGCACCCCATCCCGCAGTGCTCACTGCACTCCTGTACGGGAAGTGGAGTGCAATGCTAAAGCCCGCAATAAGCTAATTGAAAACGAGAGCGTGCAAACTCCCACATGCCCACCAGAGATTCGCCAGCAGCGTCGCTACGTCTCAAAAGATGGGAAATGCCGAGTAGACTTGGCACACATGGCAGAAAAGGAGCGATTTCTGGCAGACATCTTCACTTCGTTTGTGGACCTCCAgtatagatggtttctgtttgtatTCATGATGTGCTACACGGTCACTTGGTTTATATTCGCAGGGCTTTATTCGCTAAATGCTTTTCTGCGTGGAGATCTTGAACATCCTGCGGACACTGATGTTTGCTTCCAAAATATAGATGGATTTGTTTCAGCGTTGCTCTTTTCAGTGGAAACACAGAGGACTATTGGTTATGGCGCTCGTACAGTCTCACCACGCTGCTATGAAGGTGTGTTTTTAGTCATGGCACAATGTATTGTGGGATCCATGATTGACGCTCTAATGGTGGGCTGCATGTTTGTTAAAATCTCACGTCCTAAGAAGCGAGCCGAAACACTTCTTTTTAGTCGGACTTGTGTTGTGGCCAATCGGGATGACCGTCTCTGCCTTATGTTTCGTCTTGGAGACTTGCGTGAGAGTCACATGGTTGACGCCAAAGTACGTGCTAAACTCATCAAGTCTCGGCAGACATCGGAAGGGGAATTTCTCCCACTGGAGCAATCGGAGATCGACCTGGGCTATGAGAGCGGCTCTGACCGACTGTTTCTAGTGGAGCCGCAAGTGATTCAACACATCATTGATTCCAGCAGTCCTTTCTGGGAGCTCGGGCCAGAGAAGCTGCGGAAGCAACAGTTTGAAATTATTGTCATCTTGGAGGGCATAGTGGAAGCTACAGGAATGATGTGCCAGGCCAAGACGTCCTACATCGAGACGGAGATCGAGTGGGGTGCCCGTTTTGAGCCGTGCATGACTTTGGAGAAGGGCTCGTTCCGGGTGGACCTGCGGCGCTTCCACAGCACATATCCAGTGCCGCTGCCGCCGTGCAGCGCTCAGGACACGCATCACCTGCTGGAGCTCCAGGACTCTCTGAAAGACTGCGTGAACTGGAAAATGGGTGGCGACGATCAAGAAAACGACATCGTGAAACCATCTGGAGCCTGTACTTTCACTATACATGAGATCCAGGAGGAGCGAGTTTCAGTCAACGAATCTGACTCGCTT

Function

GO:

id name namespace
GO:0034765 regulation of ion transmembrane transport biological_process
GO:0006811 ion transport biological_process
GO:0006813 potassium ion transport biological_process
GO:1990573 potassium ion import across plasma membrane biological_process
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005242 inward rectifier potassium channel activity molecular_function
GO:0005244 voltage-gated ion channel activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-131127-162 Predicted to enable inward rectifier potassium channel activity. Predicted to be involved in potassium ion import across plasma membrane and regulation of ion transmembrane transport. Predicted to act upstream of or within potassium ion transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane.

Ensembl:

ensembl_id ENSDART00000059630

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00018519 lncRNA downstream 155705 37259354 ~ 37264265 (-) True XLOC_009422
TCONS_00018840 lncRNA downstream 635197 36784479 ~ 36784773 (-) True XLOC_009419
TCONS_00019218 lncRNA downstream 916781 36500206 ~ 36503189 (-) True XLOC_009416
TCONS_00018839 lncRNA downstream 982124 36421591 ~ 36437846 (-) True XLOC_009415
TCONS_00018510 lncRNA downstream 1050284 36365724 ~ 36369686 (-) True XLOC_009414
TCONS_00019219 lncRNA upstream 305587 37731055 ~ 37733875 (-) True XLOC_009433
TCONS_00018545 lncRNA upstream 401917 37827385 ~ 37829157 (-) True XLOC_009441
TCONS_00018553 lncRNA upstream 451248 37876716 ~ 37880887 (-) False XLOC_009444
TCONS_00018552 lncRNA upstream 451248 37876716 ~ 37880887 (-) True XLOC_009444
TCONS_00019220 lncRNA upstream 870689 38296157 ~ 38297734 (-) True XLOC_009453
TCONS_00018518 mRNA downstream 315805 37022018 ~ 37104165 (-) True XLOC_009421
TCONS_00018514 mRNA downstream 480315 36553823 ~ 36939655 (-) False XLOC_009418
TCONS_00018516 mRNA downstream 692508 36556503 ~ 36727462 (-) True XLOC_009418
TCONS_00018515 mRNA downstream 759181 36556503 ~ 36660789 (-) False XLOC_009418
TCONS_00018512 mRNA downstream 886648 36506134 ~ 36533322 (-) False XLOC_009417
TCONS_00018522 mRNA upstream 31541 37457009 ~ 37543839 (-) False XLOC_009424
TCONS_00018523 mRNA upstream 35315 37460783 ~ 37543591 (-) True XLOC_009424
TCONS_00018524 mRNA upstream 137114 37562582 ~ 37589600 (-) True XLOC_009425
TCONS_00018525 mRNA upstream 183274 37608742 ~ 37610434 (-) True XLOC_009426
TCONS_00018526 mRNA upstream 193536 37619004 ~ 37620167 (-) True XLOC_009427
TCONS_00018517 other downstream 545604 36874251 ~ 36874366 (-) True XLOC_009420
TCONS_00018513 other downstream 886723 36529465 ~ 36533247 (-) True XLOC_009417
TCONS_00018488 other downstream 2207733 35167295 ~ 35212237 (-) True XLOC_009400
TCONS_00018481 other downstream 2307184 35095205 ~ 35112786 (-) False XLOC_009398
TCONS_00018452 other downstream 3140435 34279421 ~ 34279535 (-) True XLOC_009383
TCONS_00018535 other upstream 302366 37727834 ~ 37729166 (-) True XLOC_009432
TCONS_00018590 other upstream 2643543 40069011 ~ 40069127 (-) True XLOC_009467
TCONS_00018622 other upstream 3967933 41393401 ~ 41396073 (-) True XLOC_009478
TCONS_00018633 other upstream 4103792 41529260 ~ 41543440 (-) True XLOC_009482
TCONS_00018660 other upstream 4852205 42277673 ~ 42283815 (-) True XLOC_009502

Expression Profile

//