Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00000017 |
| length | 615 |
| lncRNA type | retained_intron |
| GC content | 0.56 |
| exon number | 2 |
| gene id | XLOC_000005 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_007112.7 |
| NCBI id | CM002885.2 |
| chromosome length | 59578282 |
| location | 36552 ~ 39191 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0006606 | protein import into nucleus | biological_process |
| GO:0015031 | protein transport | biological_process |
| GO:0034605 | cellular response to heat | biological_process |
| GO:0005829 | cytosol | cellular_component |
| GO:0005634 | nucleus | cellular_component |
| GO:0005737 | cytoplasm | cellular_component |
| GO:0030544 | Hsp70 protein binding | molecular_function |
| GO:0061608 | nuclear import signal receptor activity | molecular_function |
| id | description |
|---|---|
| ko03110 | Chaperones and folding catalysts |
| id | description |
|---|---|
| ZDB-GENE-050417-34 | Predicted to enable Hsp70 protein binding activity and nuclear import signal receptor activity. Predicted to be involved in cellular response to heat and protein import into nucleus. Predicted to act upstream of or within protein transport. Predicted to be located in cytoplasm. Predicted to be active in cytosol and nucleus. Human ortholog(s) of this gene implicated in hypomyelinating leukodystrophy 13. Orthologous to human HIKESHI (heat shock protein nuclear import factor hikeshi). |
| ensembl_id | ENSDART00000166557 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00003001 | lncRNA | upstream | 4374 | 27814 ~ 32353 (+) | False | XLOC_000004 |
| TCONS_00000015 | lncRNA | upstream | 4374 | 31787 ~ 32353 (+) | True | XLOC_000004 |
| TCONS_00000013 | lncRNA | upstream | 4822 | 27814 ~ 31905 (+) | False | XLOC_000004 |
| TCONS_00000014 | lncRNA | upstream | 5406 | 27849 ~ 31321 (+) | False | XLOC_000004 |
| TCONS_00003000 | lncRNA | upstream | 16396 | 18716 ~ 20331 (+) | False | XLOC_000002 |
| TCONS_00000021 | lncRNA | downstream | 88820 | 127266 ~ 133215 (+) | False | XLOC_000008 |
| TCONS_00000022 | lncRNA | downstream | 88854 | 127300 ~ 129591 (+) | False | XLOC_000008 |
| TCONS_00000023 | lncRNA | downstream | 92181 | 130627 ~ 131221 (+) | True | XLOC_000008 |
| TCONS_00003002 | lncRNA | downstream | 118346 | 156792 ~ 157282 (+) | True | XLOC_000011 |
| TCONS_00002801 | lncRNA | downstream | 182939 | 221385 ~ 222804 (+) | True | XLOC_000014 |
| TCONS_00000012 | mRNA | upstream | 2397 | 27690 ~ 34330 (+) | False | XLOC_000004 |
| TCONS_00000011 | mRNA | upstream | 9472 | 25585 ~ 27255 (+) | True | XLOC_000003 |
| TCONS_00000008 | mRNA | upstream | 13338 | 18716 ~ 23389 (+) | False | XLOC_000002 |
| TCONS_00000010 | mRNA | upstream | 13554 | 18786 ~ 23173 (+) | True | XLOC_000002 |
| TCONS_00000006 | mRNA | upstream | 20455 | 15062 ~ 16272 (+) | True | XLOC_000001 |
| TCONS_00000018 | mRNA | downstream | 71352 | 109798 ~ 119146 (+) | True | XLOC_000006 |
| TCONS_00000019 | mRNA | downstream | 81514 | 119960 ~ 125246 (+) | True | XLOC_000007 |
| TCONS_00000020 | mRNA | downstream | 88804 | 127250 ~ 134079 (+) | False | XLOC_000008 |
| TCONS_00000024 | mRNA | downstream | 97457 | 135903 ~ 142469 (+) | True | XLOC_000009 |
| TCONS_00000025 | mRNA | downstream | 105838 | 144284 ~ 151998 (+) | True | XLOC_000010 |
| TCONS_00000003 | other | upstream | 23470 | 12129 ~ 13257 (+) | False | XLOC_000001 |
| TCONS_00000036 | other | downstream | 221594 | 260040 ~ 293894 (+) | False | XLOC_000017 |
| TCONS_00000047 | other | downstream | 475567 | 514013 ~ 515322 (+) | True | XLOC_000021 |
| TCONS_00000052 | other | downstream | 499143 | 537589 ~ 546217 (+) | False | XLOC_000023 |
| TCONS_00000053 | other | downstream | 537998 | 576444 ~ 576521 (+) | True | XLOC_000024 |
| TCONS_00000060 | other | downstream | 1180245 | 1218691 ~ 1218805 (+) | True | XLOC_000029 |
