RNA id: TCONS_00000156



Basic Information


Item Value
RNA id TCONS_00000156
length 679
lncRNA type lincRNA
GC content 0.43
exon number 4
gene id XLOC_000082
representative True

Chromosome Information


Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 7092273 ~ 7115914 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence


TTCACCCTCTTGATCTGCTTTCTGTTCTCGTAGCAAATAAAGTTTACCACTAAGATTGCTTCCCGTTTCCATGGCTTGCATCCACGCACCGTGCGCTCGCCACCGATCTGTAAATGTGGAGGAGCGAAGGCAAGAGAATGCACTCTAAAGGTCAGTATCAGAGGCCAGAATGTCCAGAAGAAGTCTAAATTGTAACTTTTCATCCAATTCAAAAGCCACGCCATTACTCGAGAAAACTTCTTCTGTGTTGGACGGCTCAAAAACATCAGTGTTTCATTCTCCACAGCACGCTCAGCTCAGCAACGCAACCGTGTGCGTCTTATAAACACTAACACGACGAGCAAGGAGAGATATCAAGAGAACCGTGAACAAAAAAAGATGCTACCCTGAGAAAGCATCCGAAAGTGACTGGGATATGCTGCAAATGGAATTAAAATGAATACTGATGTAGTGTATCGCTTTTGGAACATTCTACGAAGGCTTGTATGAAAACTGAAAATACAAAATGGTTTCAAGGAACACATTTGTACTGCAGGCTGACACTTCAACAGGCTTTTACAAGGGCTTATCTAAATGGTAGGCATTAAAAACCCAGGTAAACAAGACGAAACTTGCTGCAAAACACGCTGGAATgaggattttaaacattttcttatTATCCGTCTTTGTCTGGTTGGCC

Function


GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000194346

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TCONS_00000153 lncRNA upstream 102246 6956913 ~ 6990027 (+) True XLOC_000080
TCONS_00003024 lncRNA upstream 331343 6759183 ~ 6760930 (+) True XLOC_000077
TCONS_00000148 lncRNA upstream 423934 6665033 ~ 6668339 (+) True XLOC_000076
TCONS_00003022 lncRNA upstream 537803 6379878 ~ 6554470 (+) True XLOC_000072
TCONS_00003025 lncRNA downstream 396615 7512529 ~ 7512762 (+) True XLOC_000084
TCONS_00000159 lncRNA downstream 401535 7517449 ~ 7523930 (+) False XLOC_000085
TCONS_00000161 lncRNA downstream 413939 7529853 ~ 7539716 (+) False XLOC_000085
TCONS_00000162 lncRNA downstream 422494 7538408 ~ 7539716 (+) False XLOC_000085
TCONS_00000166 lncRNA downstream 430769 7546683 ~ 7554215 (+) True XLOC_000085
TCONS_00000151 mRNA upstream 166866 6817292 ~ 6925407 (+) False XLOC_000079
TCONS_00000152 mRNA upstream 167160 6862917 ~ 6925113 (+) True XLOC_000079
TCONS_00000150 mRNA upstream 167170 6817292 ~ 6925103 (+) False XLOC_000079
TCONS_00000146 mRNA upstream 428150 6646572 ~ 6664123 (+) False XLOC_000075
TCONS_00000145 mRNA upstream 429347 6646529 ~ 6662926 (+) False XLOC_000075
TCONS_00000157 mRNA downstream 73942 7189856 ~ 7448084 (+) False XLOC_000083
TCONS_00000158 mRNA downstream 298404 7414318 ~ 7448795 (+) True XLOC_000083
TCONS_00000160 mRNA downstream 401540 7517454 ~ 7539716 (+) False XLOC_000085
TCONS_00000163 mRNA downstream 422995 7538909 ~ 7550654 (+) False XLOC_000085
TCONS_00000164 mRNA downstream 425064 7540978 ~ 7550899 (+) False XLOC_000085
TCONS_00000154 other upstream 28330 7063837 ~ 7063943 (+) True XLOC_000081
TCONS_00000149 other upstream 304469 6787690 ~ 6787804 (+) True XLOC_000078
TCONS_00000134 other upstream 906741 6182342 ~ 6185532 (+) False XLOC_000067
TCONS_00000123 other upstream 1590189 5497285 ~ 5502084 (+) True XLOC_000062
TCONS_00000121 other upstream 1641829 5438743 ~ 5450444 (+) False XLOC_000062
TCONS_00000208 other downstream 2038180 9154094 ~ 9155273 (+) False XLOC_000113
TCONS_00000209 other downstream 2039079 9154993 ~ 9155521 (+) False XLOC_000113
TCONS_00000213 other downstream 2102734 9218648 ~ 9221616 (+) True XLOC_000115
TCONS_00000230 other downstream 2935860 10051774 ~ 10054771 (+) False XLOC_000126
TCONS_00000231 other downstream 2935870 10051784 ~ 10058057 (+) False XLOC_000126

Expression Profile


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