RNA id: CI01000186_00120791_00130397.mRNA


Basic Information

Item Value
RNA id CI01000186_00120791_00130397.mRNA
length 513
RNA type mRNA
GC content 0.40
exon number 4
gene id CI01000186_00120791_00130397
representative True

Chromosome Information

Item Value
chromosome id CI01000186
NCBI id null
chromosome length 966831
location 120791 ~ 130397 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GAACATCATATGTGGAGAAGATTCCTGCCTCCCTGTTGATTTTAGCTATGAGAGACTTTTCAGCTCCAAATTTCCACAAAAGCACCATAATCACTCAACCAACACATCCACGTGGAGCCAAGAACAATGAAACAAAGTTAATCCCTTATCTGTCACAGTCCTGCTGGCTGGACGTCTCCCAACCAGCACACCCATATGAAATATCAGTGATGGAGGGAGATTCAGTCACTCTAAACTCTGATCTTACGGAAATGAAGGATGATGATGTGATTCAGTGGAGGTTTAGAAACATTTTAATAGCTAAAATCAATAAACAGTTCGACAGAATCACTGTATGTGATGATGTTCTTGATGGGAGATTCAGAGACAGACTGAAGCTGGACAAACAAACTGGATCTCTGAACATCACAAACACCACAATGAAACATGATGGAGTTTGTGAATGGACCAGATTTTTCAGCATGTCTTTTATGTCTTTTTTCAGCATGTCTTTTATTCATCTCACTGTCTACG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU432204 lncRNA upstream 67028 53350 ~ 53763 (+) False G378148
TU432203 lncRNA upstream 67028 53475 ~ 53763 (+) True G378148
TU432202 lncRNA upstream 67086 53350 ~ 53705 (+) False G378148
TU432201 lncRNA upstream 67086 53475 ~ 53705 (+) False G378148
TU432200 lncRNA upstream 67693 52874 ~ 53098 (+) True G378147
TU432242 lncRNA downstream 22668 153065 ~ 153273 (+) True G378184
TU432255 lncRNA downstream 27942 158339 ~ 158576 (+) True G378187
TU432169 lncRNA downstream 32577 162974 ~ 165447 (+) True G378117
TU432284 lncRNA downstream 115033 245430 ~ 245978 (+) False G378204
TU432285 lncRNA downstream 115033 245430 ~ 248174 (+) True G378204
CI01000186_00111894_00116331.mRNA mRNA upstream 3953 111894 ~ 116838 (+) True CI01000186_00111894_00116331
CI01000186_00102313_00108968.mRNA mRNA upstream 10924 102112 ~ 109867 (+) True CI01000186_00102313_00108968
CI01000186_00098106_00099994.mRNA mRNA upstream 20628 97176 ~ 100163 (+) True CI01000186_00098106_00099994
CI01000186_00091411_00095100.mRNA mRNA upstream 25253 90979 ~ 95538 (+) True CI01000186_00091411_00095100
CI01000186_00016608_00025920.mRNA mRNA upstream 94037 16608 ~ 26754 (+) True CI01000186_00016608_00025920
CI01000186_00133147_00140951.mRNA mRNA downstream 2750 133147 ~ 140951 (+) True CI01000186_00133147_00140951
CI01000186_00190672_00191178.mRNA mRNA downstream 59757 190154 ~ 191358 (+) True CI01000186_00190672_00191178
CI01000186_00192359_00208026.mRNA mRNA downstream 61962 192359 ~ 208311 (+) True CI01000186_00192359_00208026
CI01000186_00209162_00212762.mRNA mRNA downstream 78765 209162 ~ 213137 (+) True CI01000186_00209162_00212762
CI01000186_00225560_00231307.mRNA mRNA downstream 95163 225560 ~ 231570 (+) True CI01000186_00225560_00231307
TU432150 other upstream 107296 11415 ~ 13495 (+) False G378108
TU432362 other downstream 281423 411820 ~ 411920 (+) False G378256
TU432363 other downstream 281423 411820 ~ 414878 (+) False G378256
TU432364 other downstream 281423 411820 ~ 414878 (+) False G378256
TU432365 other downstream 281423 411820 ~ 411920 (+) True G378256
TU432491 other downstream 764111 894508 ~ 896717 (+) True G378343

Expression Profile