RNA id: CI01000186_00240507_00248051.mRNA


Basic Information

Item Value
RNA id CI01000186_00240507_00248051.mRNA
length 919
RNA type mRNA
GC content 0.52
exon number 5
gene id CI01000186_00240507_00248051
representative False

Chromosome Information

Item Value
chromosome id CI01000186
NCBI id null
chromosome length 966831
location 240329 ~ 248084 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATGAGCAGAGAGAAGTGGAGGACCAGACAACAACTACACACTCCGTCCGACACTGATATCCTGGCGTGTGGATCAGACGTGGATCATGGAGCCATGAAGAAGATCAGCTCCATGTTCTCGACGCTTCAGGAGAAACTCCACAGAACCAAGCGGAGCGCCTCTGACCCTGGAGCGCTGCAGACGCTGGCCGCGACGCCTCCGCCCGGACGAGAGCGCAGTCACATGGGCCAGCTGTTCTTCGAGTACCTGCTGGTGGTTAGTCTGAGGAAGAGGAGAAACGAGGACACTTACGAGCCACACATCACGTACCAGTTCCCCAAGCGTGAGGTGATGGGGCGGCTGCAGCGAGAGGAAGAGGAGAAGTGCATGAAGGCCGCTCATCTCTTCTGCTTTCCAGAGGGAATCAACTGGGCACCTCTGACCGAGTACAGCAGAGTCCCGCTCAACTTCCTGTTGTTGTGTGCCCTGGCAGCTACAGACGAGCTGAACCGGCTGGTGTCAGAGGCCTTCCTGTCCGTCTTCATTAAGAGCGTGGGCCATTTCTCAGAACACGTCAAGCGCTGCGGGAACGGCCGCCAGTTCCAGAAGAAGAGCTTCCTGAAGGCTGTGGAGCACAAATCGCACCTGAACTTCGTCAAACTCTTCATCCAGACACAGATGTTTGATCTCTTCATACAGGAAGAGGAAATGCAGCCCAATCCTAATGGTACTAAAACACATCCGTCTGCTCAAAGAACCTAATGGTTCCAGAAGACGTTTTACAGTCTGACGTCACTGGAGAACCTTTCAAAGTTCCACTGATTCTCTAGTTCTTCCGTACACTCGAAATAAGAGGATCCTCAAAGGTTCTTCTACCAAAAGAACTCCATTTGATGCTTTATTAACCCTCTGATGCATCTTTTTGCTTCAAAACAATAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU432648 lncRNA downstream 24286 215782 ~ 216043 (-) True G378476
TU432620 lncRNA downstream 120161 119741 ~ 120168 (-) True G378456
TU432621 lncRNA downstream 122010 117796 ~ 118319 (-) True G378457
TU432618 lncRNA downstream 123459 114368 ~ 116870 (-) True G378455
TU432617 lncRNA downstream 127442 112664 ~ 112887 (-) True G378454
TU432658 lncRNA upstream 52835 300886 ~ 301234 (-) True G378480
TU432659 lncRNA upstream 54160 302211 ~ 302489 (-) True G378481
TU432660 lncRNA upstream 74478 322529 ~ 322781 (-) True G378482
TU432695 lncRNA upstream 196337 444388 ~ 444877 (-) True G378517
TU432698 lncRNA upstream 200058 448109 ~ 448422 (-) True G378520
CI01000186_00238503_00238674.mRNA mRNA downstream 1655 238470 ~ 238674 (-) False CI01000186_00238503_00238674
CI01000186_00215443_00223579.mRNA mRNA downstream 16750 215399 ~ 223579 (-) False CI01000186_00215443_00223579
CI01000186_00175457_00185420.mRNA mRNA downstream 54909 175199 ~ 185420 (-) True CI01000186_00175457_00185420
CI01000186_00165206_00167364.mRNA mRNA downstream 72870 165042 ~ 167459 (-) True CI01000186_00165206_00167364
CI01000186_00156270_00161766.mRNA mRNA downstream 78563 156183 ~ 161766 (-) True CI01000186_00156270_00161766
CI01000186_00259516_00260745.mRNA mRNA upstream 11365 259416 ~ 261189 (-) True CI01000186_00259516_00260745
CI01000186_00261713_00270433.mRNA mRNA upstream 13372 261423 ~ 270510 (-) True CI01000186_00261713_00270433
CI01000186_00281889_00289711.mRNA mRNA upstream 32861 280912 ~ 290480 (-) True CI01000186_00281889_00289711
CI01000186_00304422_00316712.mRNA mRNA upstream 56267 304318 ~ 316863 (-) True CI01000186_00304422_00316712
CI01000186_00318098_00318475.mRNA mRNA upstream 69677 317728 ~ 318475 (-) True CI01000186_00318098_00318475
TU432571 other downstream 16565 217476 ~ 217536 (-) True G378411
TU432635 other downstream 46569 192170 ~ 193760 (-) True G378466
TU432622 other downstream 118904 120682 ~ 121425 (-) True G378458
TU432596 other upstream 112859 360910 ~ 366991 (-) True CI01000186_00360860_00361637
TU432687 other upstream 148207 396258 ~ 396755 (-) True G378509
TU432574 other upstream 237745 488357 ~ 488483 (-) True G378414

Expression Profile