RNA id: TU432596



Basic Information


Item Value
RNA id TU432596
length 5408
RNA type TUCP
GC content 0.42
exon number 3
gene id CI01000186_00360860_00361637
representative True

Chromosome Information


Item Value
chromosome id CI01000186
NCBI id null
chromosome length 966831
location 360640 ~ 366991 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


TCTAATGCCTGTGTATTCTCTCCACTTGTATTCCCTTCAGGTTTCAAAAGGAAGCATTTGCTGGGCTTTAGCTTAAATCCATGTTGTCTCAACCGGTTGAACACAATTTCAAGCCTTTGACAATGGCTATCGTAGTCCTTCGAAAAGACAATAATGTCATCAGGGTAGATAAGCAGTATGTCAAACGTCAGATCACAGAGCACCACCCCCATCAGATGCTGAAATGTCGCATTGCAAAGTCCGAATGGCATCCTGGTCCATTAAAATAGACCAAAGAAAGTGGTGACGGCGGTCTTTGCTCTGTCTTCCTCACTCATGGCCACTTGGAAATAGCCTGAAGTAAGATCAAGCATGGAGAACAGCTGTGCATTTCCCAAGGCGTCAAGTGACTCCTCGATGCGCGGAAGGGGTAAGCGTCTTTGCAGGTCACTTTATTCAGCCTTCTATAATCGCAACAAAAACACCTGAAACACATTCTGCAATGTCTTTGCTTAATGGGAGGAGCATCTCCTGTAGGGATGTTGTGTGTGACAGATGTCTTGTAACCAAAGTCATCCTTTGAAAACACATCACTGTGCTTTGCCAGTAGGTCCCGGAGTTTTCCACGCTGAGCTTCTGTGAGTTCTTCAAGATTTGTTTGCACTGCAACAGGCAACTGCTCCGTGGTGCCTTCCTCCACTTTTACCTGATGTTGCTGCACAGCCTTGACATGCAGAGCTCCTTCCTTGTCCTCAAACTCAACAAGCACTTTTGGATCAACCTCTTGCGGCTTACACAGTGCTGCTATCCTACATCACGGCATGAGCTTCACAGCCTTCTCACTAGAATTCAACACTCTGTCTGGGACTTTACCATAAGCTGTCTTGGCCAGCACATTAGCAATAAGAACACTCTTTGGCAAGTTGACTTCTGATGAGTCCTCGACCAGCACTTGGCTGCTCACTTTTGGTGGTATTCTACAGCAACCTTCCAAAACATGCTCACTGAATGGAGGGATAGTGATTGCTTGCTTTCCAGCTACTTTCACAAACCCAATCTTGTTTCCACAACTCAATGCCTCAGTCTGTATCTTAATGTTAGCCAACACACGCTGGACTTTTGCTTCCCCGACACTATGGCTATACCTGTCCATCTTCTTCATAACTTCAGTGGCCATGAATAGATCTCTGAGGTCACTTAACACATTCATCCCAACAATTTTGGCTGCACAGCAGTTCTTAAAGAAAATGGTGTCATTGTCCAGGTTAAGTAAATTCAGAATTGATTCATTCCATTGTAAGAATCAATAATTATTCATTTATCTATATCAGCAGTGGAGTAAACAATCATGTCATAATCCAGCTCAGTTCAATTCGCATACAAGGGTGTCGATGCAGGCAGATCAAAACATTGTTGAATATCAAGTGTCAAGTGTCCCCAACTAAGCAAGCCAAAGGCAACGACGGCAAGGAACCCAAACTCCAACAGGTGACATCAGGTGGCAAACAGGTGTTAAAATGGAGAAAAAAAAAAAAAAACCTTGGGAGAAACCAGGCTCAGTCAGGGGGCCAGTTTTCCTCTGGCCAACGGCGAACAGTGCGTGATTATGATTCAGGCAGCTTTCATAAGTCAGATTGAAATTGCAACAGTCAAAGTATTTATTCCAGTTCCAACTAGTTGAGGATCGTATTCTTCATGCCAGTATGGGACGGTTTGTTGAGGATCTGTGCCACTGGCTGTCGTGTCGATGAGGCCTTCACAGGGGATGATCTAGTAGACACTTCAGGGCTGCGTTGTCGTTGTGTCTAGGCGCAGGTCCTTGATCTCGGCTGACTACGGTACACTTTGAGATAAACAGAGAGACTAATATTAGCGTAGATGCCATTCTTCTTCTGATGTAACGAGTATGTAACGAGTACATCTGGTGTTATAGGAAGTTTTCCTGGTTCCGGCTGACCTAATTTATGCAGCCTAACATAAATCACCGAAAACACTTTCACAGAGGGCCTTGAAAACATTCCCTGCATCACAGTCTGCAGTGTGACTTCTGATAACGGATGGACCTGGACTCTCCAGCACTGAGGTAACTTGATCAGCTGTCTTTTCCATCTCCACTTTGTTTTTCAGAGGTTGCATCCATTTTAATTTTCTCTGTTCTGAGGACAGCATCGGCTAGTCTGCCCTGGCTTACTACTCATATGTCAGGTCCCTCTCAGCTTTGACTCTCCCCTTCATTTCACGTCGTAGCGAGTCATCCTTGTGGCGTAACACAAGCTGTTCTTTCAGTACACCATCAGCATCAGGGACTCTAGTCGGCCCCCGGTTCTGGATGATACTCAGCTTCTCCTGCAAGTCATAAGCATAATAGCGGATAGTTTCTCCAGGCATTTGCTTGCGGTCGTAAAACACTTTCAGTCTGCTGCCAATGGGAAGTTTGTCCCCATATGTCTGGTCTAAAGCATCAAAGATCTCATCCACTGACCTCCCATTTCCGATGAGCATAAACTTGATTGTCATCTTAGCCTCATCTTTTAAATACTGCTTAACAAACTCAATTTTGTCTTCTTCTGGAAGTTTCAACATCTTAAATCCGGACTTCATCGAGTTTATTGATTCTTTTATACTCAACTCACCAGGCCTGGATTGATATCTGCTGAACTGTGGGAGTTTATGGTCTCTTGGGATGTAAACAGTAGATGGCGCTCTTTGGGCGGCAGCCTGTTGATCAATAACAGCTTTAGCAAGCAAAAGCACTTCTCTCTGTTCGGCTCTGGCCTGTTCCAACATACCTACCTGTTCACCGAACCTCCTTTGCATCTCTGCAAACTGTCTCTTTAATTCCTCCAGTTCAGCGATAGTGTCGAATCAAAGACCTGGAATTTACACTTAATTAGTATACTCGCTAGTTTATCCTGTTCGTGACGTCAGTATGTGGTGGAGGGAAATATGCCACCGCCTTGTGTGGGGAATGTTCAGCACTTAGCTAAGGAAGATCCTTGTCCTCCCACCCAATGCTTTTAGTCGTTGTACAACTATTAGTTGTATATTGTGCCTATCGTGTTACAATGTGTAAATGCTGTTAAAGAGGTGGTGAGGGGCTAGAAAAAGAGTAGAAAAAGAGGAAAATAGTGTACATCACCACTCTTAGTTCATGGACGAGGCACTGAATGATGTCCAACGGATGGCAGGGTAATGTCTCTTCACTCAATAACCCTCAGCGATTGTCCCCGCGATACTTACCAGCCTACGTCTGTTACATAAACATAACTTTAACGTTATACACTACCCGAAAACCAATGCATTCTTCCTCAGCGCATCACTGCTCTTCTCCACCGTCTCACCGTTCTCTCTTCACTCTTCGCGCACATTTAATGGCAGAATGCTTTAACATTTCAATAATTAATTGATAAACTAGTGTTTTCTGTATTTTCGGCTGCAGTGATGAAGTCGACGAGGCTGACTCGTCATCTCGTCACACGCCTATATGCACGTTTCATACGGATTACATAACCTGAGAATATTTCGGTTCTTTTTTTTTGGCGCACTCAAGTTCACAGAGAGAGATGGCAGAAAGCGCACCCTGTATGCTTTGATTATTTTACTAAAGCACAACGTTTTGTTAAGTAGACACTTCACAGATTCAAAAGATGTATTACTCTCATCTGTATGACCAAAAATGACACAGTATTTTAAGTGCAAGTGATCGCACCGGCGCCTCCATGATAGCTGTCATGCAGTGCTATTCAGCTTTCACGCTCTGCACAAACACTTGAATAGCCCCCATTTTTCTAGGTTAACATTAAAGCAAGTTGCTAGTACTTACATGTTTCAGATGATAAGCCATATTTGAGATGGATGAATGATCGTTTGGATGTCCTGCCCGATGTACTGTAATTACCACATTGATCAGCTGTTAATGATCTGTCCGTCACAGACTGCATGACTTTGCCATTTCCTGTGAATTTTTTTTCCTGCGACTAAGTAACTAATAAAATTTTGGTTTGACTAATGCCAAGTTCACACTACAGGAATTTAAATGTCGGCAGATTGCTGTGCTGTTCAGACTACATGACTTGCTGTAGAGTCTTGAAGTCTTTGTGGTGTTCACACTACGTGACACTATGTAAATGATCCGCAGCAGGGAGTTACACACTACACAAGCGGACAACAACTCTGTCACCCAATGACTATTTGAAAATGGACATTGGGAAGAAATTTAATTAAATTAACCCTTTCACATAAGTTTAAAATATTCTGAGTGTTTTGTCATTTAAAAACCTATATAATGATGTTGATCATAATCTATAGCTACAATGACGGATAGCTGATAAACGTACTCCACACGGCTCCGGGGGGTTAATAAAGTCCTTCTGAAGCGAAGTGATGTGTTTGTGTAAGAAAAATATTCATATTTAACAAGTCAAAAGTAAAATATCTAGCTTCCGCCAGACCGCCTTTCATATTCAACAAATGAAAAAAGGGTAACTGACGTCGCATCAGTTAAGCTTCTTTCATAAGTTGATTAGGGAAGGTGTAGGATGTAGCGTAAGCTTTGTGAACTGTGAGAGTTTTACACTTTCTTCGTAAGTTGAATACGGAAGGCTGTCTGGCAAAAGGTAGATATTTTACTTTATAACTTTTTAAATATGGATATTTATGGAGCCGTGTGGAGTACGTTTATGATGGATGGATGCACTTTCTTCAGCTCATACTCGTTGATGCTGTTCACTGCCATTTTAAAGTTCGGATGTGTCAGGATATTTATTAATATTTCTCAGATTGAGTTCATCAGAAAGAGGAAAGTCATATACACCTAGGATGGCTTGAGGGTGGGTCAGGTGTTACATTTGTGAGGAGAGTGATTAAGGGAGATTCAGTCACTCTCGACTCTCCTCTTACTGAAATGAAGGATGATGATCTGATTCAGTGGAGGTTTGGAAACACTTTAATAGCTGAAATCAATGTAACGGCCGACAGATTCACTGTATATGATGATGTTCTTGATGGGAGATTCAGAGACAGACTGAAGCTGGACAAACAAACTGGATCTCTGACCATCACAAACATCACAATGAAACATGATGGATATTATAAAATATTGGGGGAAGGGTTCATTCTCACCGTCTATGATGAAATATCAGTGAAGGAGGGAGATTCAGTCACTCTAAACTCTGATCATACTGAAGTGAAGGATGTTGATCTGATTCAGTGGAGGTTTGGAGATGGAAACACTATAATAGCTGAAATCAATAAACGGTTCGACAGAATCACTGTATATGATGATGTTCTTGATGGGAGATTCAGAGACAGACTGAAGCTGGACAATCAAACTGGATCTCTGACCATCACAAACATCACAATGAAATACACTGGAGAATATGATCTAAAGATTGACGATAAGTGGTATAATTTCTATCTCGCTGTCATTG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU432660 lncRNA downstream 38129 322529 ~ 322781 (-) True G378482
TU432659 lncRNA downstream 58421 302211 ~ 302489 (-) True G378481
TU432658 lncRNA downstream 59676 300886 ~ 301234 (-) True G378480
TU432559 lncRNA downstream 119839 240855 ~ 241071 (-) True G378399
TU432648 lncRNA downstream 144867 215782 ~ 216043 (-) True G378476
TU432695 lncRNA upstream 77397 444388 ~ 444877 (-) True G378517
TU432698 lncRNA upstream 81118 448109 ~ 448422 (-) True G378520
TU432700 lncRNA upstream 84045 451036 ~ 451418 (-) True G378522
TU432717 lncRNA upstream 168715 535706 ~ 535908 (-) True G378539
TU432718 lncRNA upstream 169202 536193 ~ 536507 (-) True G378540
CI01000186_00340443_00342720.mRNA mRNA downstream 17944 340271 ~ 342966 (-) True CI01000186_00340443_00342720
CI01000186_00318098_00318475.mRNA mRNA downstream 42435 317728 ~ 318475 (-) True CI01000186_00318098_00318475
CI01000186_00304422_00316712.mRNA mRNA downstream 44047 304318 ~ 316863 (-) True CI01000186_00304422_00316712
CI01000186_00281889_00289711.mRNA mRNA downstream 70430 280912 ~ 290480 (-) True CI01000186_00281889_00289711
CI01000186_00261713_00270433.mRNA mRNA downstream 90400 261423 ~ 270510 (-) True CI01000186_00261713_00270433
CI01000186_00408656_00408943.mRNA mRNA upstream 41144 408135 ~ 408943 (-) True CI01000186_00408656_00408943
CI01000186_00433415_00435816.mRNA mRNA upstream 65842 432833 ~ 435994 (-) True CI01000186_00433415_00435816
CI01000186_00453106_00464818.mRNA mRNA upstream 85101 452092 ~ 464818 (-) True CI01000186_00453106_00464818
CI01000186_00485805_00522951.mRNA mRNA upstream 118814 485805 ~ 523767 (-) False CI01000186_00485805_00522951
CI01000186_00525649_00532282.mRNA mRNA upstream 158565 525556 ~ 532353 (-) True CI01000186_00525649_00532282
TU432581 other downstream 112826 245373 ~ 248084 (-) True CI01000186_00240507_00248051
TU432571 other downstream 137146 217476 ~ 217536 (-) True G378411
TU432635 other downstream 167150 192170 ~ 193760 (-) True G378466
TU432622 other downstream 239485 120682 ~ 121425 (-) True G378458
TU432687 other upstream 29267 396258 ~ 396755 (-) True G378509
TU432574 other upstream 118805 488357 ~ 488483 (-) True G378414

Expression Profile