RNA id: CI01000186_00567272_00571417.mRNA


Basic Information

Item Value
RNA id CI01000186_00567272_00571417.mRNA
length 1615
RNA type mRNA
GC content 0.56
exon number 4
gene id CI01000186_00567272_00571417
representative False

Chromosome Information

Item Value
chromosome id CI01000186
NCBI id null
chromosome length 966831
location 566929 ~ 571768 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATATAAAGGAAAGTGCGCGCGCTTTCAGTGTAGCTTCACATCTTTATTGATTATAACGCGTTGTGTCGCGTCGCACGCCTGCAGTAGACGCGCTGTCAGGAGTCGTGCCTAGACATGGCAGAAGTGCCTTCATCAGCCGCGGTGAGAGGGCGGGAACGCGCTCATTTCTGAGGAGGGTTTAAACGGTGACTGATAAATCTGAGGAGATTTCCGCCAACAAACTCAAAAAAAAAATGTAGTTAAACTTTTATCGATGGCGCGTGGTGGGTGGACTGAGTTAAATAAATACTGTCCTTATTAACAGGTTCGTGTCAACCTTCTTTAGTCTGAAGTCCTTTCTCAAATGGACCCGCTCCGCTTCGTCAGGCTGCTGGCGCTGTGCGCGTGCCTGTGGCCAACCTGCACGCGCGGCTCAGATCTGATCCGTGCCGAGCGTCTGCAGGTGCGTGACCTTCGCTCCAGAAGTGCTGTTCTGCAGTGGCGGCCGGTGCTCAGCGGAGGTCTGGGAAACTACAGCCTTCACTACAAGCCCGACCCGTCAGACGGCACGGCAGCATCCATCAGCATCGGCCCCGGCAGTAATCTCACTCTTCCAGGCGACTTCAGCTGGGCCGAACTCACCAACCTGCAGCCCGACACCAGCTACACGGCCTGGCTCGTTCCCGAGAACAACATTCGCTACATGAAAACGCTCAGCGTGAGCTTCAGGACCCTGCCCGAGCGGTTCGGTCCGGCGACCGTGATGGTGTCGGATTCGGGTCCGGATGGCTTGCGTGTGAGCTGGAGTCCGGTCCAGCCTGAGCAGGTCCAGCAGTACCGCGTGGAGTACGGAGAGATTCCCATCGGTCCGGTCCGGAATGTGACCCTGCCCTCCTACCAGAGCTCCGCCCTCCTCACTCAGCTCCTCCCAGACACTGAGTACCTGATCACCGTCACTGCGCTGCACTCCTCCGGCCAGCAGAGGGCGATGTCTGTCCGAGGCTGCACACGAGAAGATCTCCCGCCGCTCGCTGACCTGAAGTTGACCCCTGTGGGGCGGGGCTCGGTGCAGGTTGATTGGCAGGGACAGGGGGCGGGGCTTCTGGGCTACTGGGTGAGCTGGAAGAGAGAAGATCAGCCTTCGTCTTCCTCTTCCTCGCTGTTCCTGCCGCCACACTCACTGTCCACACGGCTGACGGAGCTGGGCCGCGGCAGCCGCGTGTGTGTGTCGCCGGTGTACCTCAGCGCGCGCGGGGAGGGGCTCTGCTGCACGGCGCACGCTTAAACTGACCCGAGCTCAGTGTTTAAAGAACTTTCAGAACAGGGTTTCTCTGACAACTGCACAGGAAGTGGATTCCAAACTGAACTGACTGTCCTTACGCAGCTGAAACTGTTCCTCTGGCTAACAAAAATAATAATTCAAATAAGTGTAAGAAATTCATGATTGACCTCATGCAGTCACATCCTGACACCTGAAAGCTGATTACACAATGTGTTTCTGTGTTAGATCTGTGTGTTGTGAGTCATAGTTTATGTGTGTTTACTGCCACCTAGCGAGCGTAAAACAACATCATCACACTGAACTTTCCCGCTGGATTGATTATGACGGAGATGAACTGCAATATTAGAACTGCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU432444 lncRNA upstream 588 565996 ~ 566341 (+) True G378322
TU432420 lncRNA upstream 74252 488802 ~ 492677 (+) True G378300
TU432298 lncRNA upstream 246807 318162 ~ 320122 (+) True G378208
TU432303 lncRNA upstream 249397 317330 ~ 317532 (+) True G378213
TU432285 lncRNA upstream 318755 245430 ~ 248174 (+) True G378204
TU432451 lncRNA downstream 65250 637018 ~ 637549 (+) True G378325
TU432453 lncRNA downstream 78044 649812 ~ 650154 (+) True G378327
TU432499 lncRNA downstream 180361 752129 ~ 752425 (+) True G378350
TU432500 lncRNA downstream 181741 753509 ~ 753729 (+) True G378351
TU432501 lncRNA downstream 182224 753992 ~ 754221 (+) True G378352
CI01000186_00542490_00549351.mRNA mRNA upstream 17324 542490 ~ 549605 (+) True CI01000186_00542490_00549351
CI01000186_00466293_00479755.mRNA mRNA upstream 86938 466293 ~ 479991 (+) True CI01000186_00466293_00479755
CI01000186_00447837_00449357.mRNA mRNA upstream 117572 447837 ~ 449357 (+) True CI01000186_00447837_00449357
CI01000186_00444836_00447109.mRNA mRNA upstream 119695 444784 ~ 447234 (+) True CI01000186_00444836_00447109
CI01000186_00427652_00430661.mRNA mRNA upstream 135613 427652 ~ 431316 (+) True CI01000186_00427652_00430661
CI01000186_00572513_00575244.mRNA mRNA downstream 745 572513 ~ 575315 (+) True CI01000186_00572513_00575244
CI01000186_00576917_00577699.mRNA mRNA downstream 5149 576917 ~ 577818 (+) True CI01000186_00576917_00577699
CI01000186_00578242_00581296.mRNA mRNA downstream 6348 578116 ~ 581373 (+) True CI01000186_00578242_00581296
CI01000186_00584169_00586048.mRNA mRNA downstream 12256 584024 ~ 586058 (+) True CI01000186_00584169_00586048
CI01000186_00592130_00592897.mRNA mRNA downstream 20086 591854 ~ 592899 (+) True CI01000186_00592130_00592897
TU432363 other upstream 150606 411820 ~ 414878 (+) False G378256
TU432362 other upstream 150628 411820 ~ 411920 (+) False G378256
TU432364 other upstream 150628 411820 ~ 414878 (+) False G378256
TU432365 other upstream 150628 411820 ~ 411920 (+) True G378256
TU432150 other upstream 553434 11415 ~ 13495 (+) False G378108
TU432491 other downstream 322740 894508 ~ 896717 (+) True G378343

Expression Profile