RNA id: CI01000186_00652978_00654267.mRNA



Basic Information


Item Value
RNA id CI01000186_00652978_00654267.mRNA
length 1434
RNA type mRNA
GC content 0.26
exon number 5
gene id CI01000186_00652978_00654267
representative True

Chromosome Information


Item Value
chromosome id CI01000186
NCBI id null
chromosome length 966831
location 652891 ~ 654900 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


GTATATGATGATGTTCTTGATGGGAGATTCAGAGACAGACTGAAGCTGGACAAACAAACTGGATCTCTGACCATCACAAACATCACAATGAAACATGTTGGAGATTATAAACTACAGACCAACTATAAGAGGGATTATTTCAGTCTCTCTGTCATTGTGTCAGTGAAGGAGGGAGATTCAGTCACTCTTGACTCTCCTCTTACTAAAATGAAGGATGATGATTGGATTCAGTGGAGGTTTGGAGATGGAAACACTATAATAGTTGAAATCAATAAACGGTTCGACAGAATCACTGTATATGATGATGTTCTTGATGGGAGATTCCGAGACAGACTGAAGCTGGACAAACAAACTGGATCTCTGACCATCACAAACATCACAATGAAACACACTGGAGAATATCAACTAGAGATCGACATTTTCAATTCTTTTTTTATTTATCTCAGTGTCTACGCTCGTCTGCCTGTTCCTGTCATCAGCAGCAACTCTTCACAATGTTCTTCATCATCATCATCATATTGTTCATTGGTGTGTTCAGTGGTGAATGTGGAATATCAGGATAAAAACACCTACAGCTGTGTGCTGAACAATCCCATCAGCCACCAGACTCAACATCTGGACATCACTCAACTCTGTCACACATGTTCAGACTCTGTCCACTGTTGTGGTCCTACTGAAGCTGTGATCCGATTGGTCCTCTCTGCTCTGGTGGGCGTGGCTACTGTCATTATTCTGGTTTATGACATCAGATCCAGAAGAGCTGAACGAGATCAAGCACAGATTCACACATCAGGTACATGATTGATGATGTCATTTCTCACACACTGATTCAGCATATATTAATATTTGTGAGATTTATTCATTTATGGCTTTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTTTTTCAGGAAGTGCTTAAATCTAAAGCAGAACGCTGAACTTTAAAGATTCTTCAAGTGTGTTTTTGTCATA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU432453 lncRNA upstream 2737 649812 ~ 650154 (+) True G378327
TU432451 lncRNA upstream 15342 637018 ~ 637549 (+) True G378325
TU432446 lncRNA upstream 84064 568776 ~ 568827 (+) True G378323
TU432444 lncRNA upstream 86550 565996 ~ 566341 (+) True G378322
TU432420 lncRNA upstream 160214 488802 ~ 492677 (+) True G378300
TU432499 lncRNA downstream 97229 752129 ~ 752425 (+) True G378350
TU432500 lncRNA downstream 98609 753509 ~ 753729 (+) True G378351
TU432501 lncRNA downstream 99092 753992 ~ 754221 (+) True G378352
TU432410 lncRNA downstream 100460 755360 ~ 799355 (+) True G378290
TU432488 lncRNA downstream 172606 827506 ~ 853304 (+) True G378341
CI01000186_00630683_00632213.mRNA mRNA upstream 20664 630683 ~ 632227 (+) True CI01000186_00630683_00632213
CI01000186_00627673_00630509.mRNA mRNA upstream 22382 627673 ~ 630509 (+) True CI01000186_00627673_00630509
CI01000186_00620849_00622738.mRNA mRNA upstream 30153 620849 ~ 622738 (+) True CI01000186_00620849_00622738
CI01000186_00611336_00614260.mRNA mRNA upstream 38311 611336 ~ 614580 (+) True CI01000186_00611336_00614260
CI01000186_00606096_00608919.mRNA mRNA upstream 43693 606096 ~ 609198 (+) True CI01000186_00606096_00608919
CI01000186_00659009_00660385.mRNA mRNA downstream 3806 658706 ~ 660444 (+) True CI01000186_00659009_00660385
CI01000186_00661361_00666431.mRNA mRNA downstream 6132 661032 ~ 666460 (+) True CI01000186_00661361_00666431
CI01000186_00676085_00686938.mRNA mRNA downstream 20657 675557 ~ 687650 (+) True CI01000186_00676085_00686938
CI01000186_00692336_00696891.mRNA mRNA downstream 37358 692258 ~ 697286 (+) True CI01000186_00692336_00696891
CI01000186_00697638_00721963.mRNA mRNA downstream 42683 697583 ~ 721963 (+) True CI01000186_00697638_00721963
TU432363 other upstream 236568 411820 ~ 414878 (+) False G378256
TU432362 other upstream 236590 411820 ~ 411920 (+) False G378256
TU432364 other upstream 236590 411820 ~ 414878 (+) False G378256
TU432365 other upstream 236590 411820 ~ 411920 (+) True G378256
TU432150 other upstream 639396 11415 ~ 13495 (+) False G378108
TU432491 other downstream 239608 894508 ~ 896717 (+) True G378343

Expression Profile