RNA id: TU432835


Basic Information

Item Value
RNA id TU432835
length 204
lncRNA type sense_over
GC content 0.33
exon number 1
gene id CI01000186_00749734_00761177
representative True

Chromosome Information

Item Value
chromosome id CI01000186
NCBI id null
chromosome length 966831
location 749543 ~ 761177 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TGAATTCACTACAGAATCTAATAAATTTGACTCTACTCGAGACTTAATGTTTTCTGATTTAAGTTTTTCACCTCATTTCTTTTCAGTTTTACTGAAGCATTCTAAGACTGACTCCTTAAGCTCAGGTATAACTATCACAGTATCAAGAATTAACAATAATTACTGCCCCTTTAATTCTATGGTTCGCTATCTCAAAGCTCGTCC

Function

GO:

id name namespace
GO:0030552 cAMP binding molecular_function

KEGG:

id description
K04739 PRKAR; cAMP-dependent protein kinase regulator

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU432829 lncRNA downstream 9143 741788 ~ 742067 (-) True G378623
TU432828 lncRNA downstream 12587 738340 ~ 738623 (-) True G378622
TU432804 lncRNA downstream 23294 727696 ~ 727916 (-) True G378616
TU432797 lncRNA downstream 27835 723145 ~ 723375 (-) True CI01000186_00723511_00725818
TU432791 lncRNA downstream 47545 702288 ~ 703665 (-) True G378604
TU432837 lncRNA upstream 8480 759893 ~ 760214 (-) True G378631
TU432725 lncRNA upstream 47517 801075 ~ 802313 (-) True G378546
TU432726 lncRNA upstream 47517 800682 ~ 802313 (-) True G378546
TU432840 lncRNA upstream 56758 808171 ~ 808400 (-) True G378634
TU432878 lncRNA upstream 190876 942289 ~ 946294 (-) True G378670
CI01000186_00723511_00725818.mRNA mRNA downstream 25289 723326 ~ 725921 (-) False CI01000186_00723511_00725818
CI01000186_00656484_00658437.mRNA mRNA downstream 92596 656293 ~ 658614 (-) True CI01000186_00656484_00658437
CI01000186_00640328_00644798.mRNA mRNA downstream 103024 639172 ~ 648186 (-) True CI01000186_00640328_00644798
CI01000186_00588218_00590230.mRNA mRNA downstream 160406 588218 ~ 590804 (-) True CI01000186_00588218_00590230
CI01000186_00525649_00532282.mRNA mRNA downstream 218857 525556 ~ 532353 (-) True CI01000186_00525649_00532282
CI01000186_00763236_00766749.mRNA mRNA upstream 11669 763082 ~ 766749 (-) True CI01000186_00763236_00766749
CI01000186_00768176_00773034.mRNA mRNA upstream 16268 767681 ~ 773102 (-) True CI01000186_00768176_00773034
CI01000186_00777653_00779924.mRNA mRNA upstream 25307 776720 ~ 782157 (-) True CI01000186_00777653_00779924
CI01000186_00799178_00799351.mRNA mRNA upstream 47532 798945 ~ 799351 (-) False CI01000186_00799178_00799351
CI01000186_00804745_00805695.mRNA mRNA upstream 53231 804644 ~ 805753 (-) True CI01000186_00804745_00805695
TU432574 other downstream 262727 488357 ~ 488483 (-) True G378414
TU432687 other downstream 354455 396258 ~ 396755 (-) True G378509
TU432596 other downstream 384219 360910 ~ 366991 (-) True CI01000186_00360860_00361637
TU432581 other downstream 503126 245373 ~ 248084 (-) True CI01000186_00240507_00248051
TU432571 other downstream 527446 217476 ~ 217536 (-) True G378411

Expression Profile