RNA id: TU432726


Basic Information

Item Value
RNA id TU432726
length 1632
lncRNA type sense_over
GC content 0.36
exon number 1
gene id G378546
representative True

Chromosome Information

Item Value
chromosome id CI01000186
NCBI id null
chromosome length 966831
location 800682 ~ 802313 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TCAGTGGCCTGTTGCATGAAGCTAGTTGAACAAACTCTGAGTTTCAGAGTAGGTTTGGAGTTGACAAATCCAGATAAATCCAACCTGGTTTAGATCAGAATCAACGGTTGCACAACGCTCGGTATAAACTTTCTCTGTCAACTCAGGTTTAATCCAGAGTTTGCAAAGCGCGTGCACCTGAAAGTGTGACACGTGTGGCAAACAGCCAATCACACGGAACAAGGAGAACGTCAGTTTGATTCACTTCTCGCGAGAGAGCCGCGCAATTCATGTCTCTTCCGAAGATTAAGAGATCGTTATGAAAAATATGAAATTAAACGCATTTACAAAGCAGGAATAAGTGAAAGTTTGAGAAGGCAGCTGAAAGAAAATATCTGACTATATCAATGCATGTCAATCAAACAAATAGACCAAATAATTAACATAGTTTAACAAAGAGCTCAAAAGAATACATGTAAGCTTATTCTGTTTAAAAGCTTTATATATTATGCATGTATTATATTTATTTTAATTTAAAAGCAAAGTTTAATATTGTCAATTAATATAATAGGCCTAATTATATGAATATGTCATGAATTATTCATAATTTTAATTTATTTAATATAAATATAATGAATAATTAACAGCAAATGTTGAGCAATTTTGTCTCTAAAATGTTTTCACTATAAACTGATTTAATTTGGAGCGCGAGATACAGGGGGAGTGGCTTTATTGCATCAGGTACACTTTACTCACAGCTGATTGGTCGAGTTTGGGTTTGTGATCTCTAACCCAGAATAAAATCTGCTCCGGAGCAGGTTAGCCGTGAAGCGTAAGTTACCATAGCAATGAACCCCACTAAAAACCAATCCACCTTCATAAGCCCGAAAAACAACAGTTTGCTCAAACTAATCTTGAACTTACCTGGGTAGAAACTGAAACCGGCTTTGTGCAACAGAAACACTGACACTGATATAGAGAAGAACTCCTGCTGGAGGGACTTTCAGGGTTCGTACAGATACTGTAAAATGAAATTCAAGGACTTTTCAAGCTGTACTTTTTTTGATTTTCAAGAACTACAATCAGAGAACTCGAACAATATCTTTATCTTTTAAATTCTAAAAAACAGATATATAAAAATATACTAATAAAACAAAATGGTGCAAATAAAGTGCAGCACATGCAGTGACATTAACAACATTAACAGAGACGAGCAAATAGAAACATAAACTTCTTACAAAATTATTATTTAAAAAACATGTAATAACAGAAGAAAACAGGCTTAAATGTGAAGTATTTTAATGTAACTAATTTCAAAGTAATTATATTGCAACTTAATGACTCGTTTGCACTAAAAATATTGTTTCTTTTTTAAAGATTTGTTTTTTTTAGTTGAGTCAGTGACATGACGTGCCTATATTTGTGTTCAAGTGCATCATTTCCATCATTTCCATATATCACTTTATAAAACCTATTTATAGAAAATGTGGATGCACATGAATGAATGAAGCTGTATTTGGCTTTCGTTCAGGCAGTATAGGCTGTCTCTAATGTCACGGCCTTATGTGCGCTTTAACACATCCTCTGTGACGGCCGAGAAACCGCGCCGTGAAATGGGCTGATGAGTGCATTGGGCTAAAAAAGTGCTCAAATCCAACAAAGTGGTTTAATAATAATGGGGTTTTGATCTTGTGAAATAAGAAATTTTAGTAGCCTACATTTCACTGTTCCAATCATTTTTATATGGGACAATATAAATATACTGCCGTAATTATGACGCCACAGAGTTAAATTCACTAAAGTGGACATAAGGCCTTGAAATATGACGCACTGCCCTAACGAAAGACCAGTTCTGAGCAAATAGATCTTTATTAATTCATGCGCATCCATACTCACGTTTTCTTCAAAGTAAAATGGAAATATAAATATGGAAACATTAATAAACTGTATAGCCTACACACAGTTATTTTATTATTGAATTATTTATTCATAAAATCATTATAGCCATCATGTTTGTTTGTTTTTTTTTGTTTTTTTTTATTCGTCATGTACGATAGATTCTGACAATTGAAACAAAAATCAGGCTTGTGTGTTTATGACATCAATTACTGCTTTATTTGTTCAATAACAGAACTTAAAATGTTATGTTGTATTATACTTTTCAGATTTTTAGTATAGGGTACAGCAAAACTACAGAGCGGTCAACACACAAAACCTTCTGTTGAACAACACCCAACGATACGTTATTAAATTGAATATAAATTAATTTATTTAAGTTTTGTGCTCGCGCTTTTTTCTGTTTTATTTGTTGCATCTGTTTCTGAATTGCTTTATTTACACCAAAATATTACACTATTCAGAAACAGGTGCAGTAATTTATAAATTTTATTTTATTTGTTTTCATCTTCAGAACACAAATTAAGATATTGTTGTTGATAATCTGAGAGGTTTATGACTTGTCCGTAGACAGCAATATAATCAACACTTTCAAGGTCCAGAAAGGTACTAAAGACATTGTTAAAACAGTCATGTGACTGCAGAAGAGACGAGAATATTAATGTCTTTCAGTAATTCAGTAAGTACTGTTTTCAAGAGTTTTCCTGGACTGGATTTCAGAAAGTCCAATTCAAGCAGCTTGTACAAACCCTGAAATCTGCAGACCTTGTTCATGCTCAAACAGCAACATTACGCTCTATAGAGTGTTTTTGTCGCCTGTATAATAATGCATGTGCATCTATCCGTGCGAAAACATCCAAGCCGTGAGAAAGTATGATTCCCAGTGCAGACAGACGGTTGCTCAGTGTTTTTCTCATGGCTTTGGCATCTCTTTCCGTCCCGCAGGAGCCCGTCAAACCCGAGGAGGGCCGAGACATGGCCAACCGCATCTGTGCCTTCGGATACATGGAGTGCTCTGCCAAAACCAAGGACGGCGTGCGGGAGGTGTTTGAGATGGCCACCAGGGCGGCGCTGCAGGCCAGGAAGGGCAAAAAGAACAACAAATGCCTGCTGCTGTAAACGGACTGTGTTCATTTTATTCCTTTTAACTGAATCAGTTCATCTAGTGTTGAGAGTTTATGTCAGTATTTAACGCTTCGATTGAATTTGCCACATTCAGACTCGCCGTGAGCCGCAAACACACGAATATGCAACCGATCCGGACCAAGGTGCACTGCACACACTCGGACAGACTTGAAACTCATTCTTTTGTCTTTCACAATAAGCAGAATTTGGTATGTTTGTGTATTAAAGCCTTTATAAGACAC

Function

GO:

id name namespace
GO:0038027 apolipoprotein A-I-mediated signaling pathway biological_process

KEGG:

id description
K04513 RHOA; Ras homolog gene family, member A

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU432837 lncRNA downstream 38716 759893 ~ 760214 (-) True G378631
TU432835 lncRNA downstream 47517 751210 ~ 751413 (-) True CI01000186_00749734_00761177
TU432829 lncRNA downstream 56863 741788 ~ 742067 (-) True G378623
TU432828 lncRNA downstream 60307 738340 ~ 738623 (-) True G378622
TU432804 lncRNA downstream 71014 727696 ~ 727916 (-) True G378616
TU432840 lncRNA upstream 5858 808171 ~ 808400 (-) True G378634
TU432878 lncRNA upstream 139976 942289 ~ 946294 (-) True G378670
CI01000186_00777653_00779924.mRNA mRNA downstream 16773 776720 ~ 782157 (-) True CI01000186_00777653_00779924
CI01000186_00768176_00773034.mRNA mRNA downstream 25828 767681 ~ 773102 (-) True CI01000186_00768176_00773034
CI01000186_00763236_00766749.mRNA mRNA downstream 32181 763082 ~ 766749 (-) True CI01000186_00763236_00766749
CI01000186_00749734_00761177.mRNA mRNA downstream 37753 749543 ~ 761177 (-) False CI01000186_00749734_00761177
CI01000186_00723511_00725818.mRNA mRNA downstream 73009 723326 ~ 725921 (-) False CI01000186_00723511_00725818
CI01000186_00804745_00805695.mRNA mRNA upstream 2331 804644 ~ 805753 (-) True CI01000186_00804745_00805695
CI01000186_00815815_00829935.mRNA mRNA upstream 13419 815732 ~ 831302 (-) True CI01000186_00815815_00829935
CI01000186_00842940_00858572.mRNA mRNA upstream 39964 842277 ~ 858696 (-) True CI01000186_00842940_00858572
CI01000186_00873286_00934953.mRNA mRNA upstream 70818 873131 ~ 934953 (-) True CI01000186_00873286_00934953
CI01000186_00956103_00957823.mRNA mRNA upstream 153790 956103 ~ 957823 (-) True CI01000186_00956103_00957823
TU432574 other downstream 310447 488357 ~ 488483 (-) True G378414
TU432687 other downstream 402175 396258 ~ 396755 (-) True G378509
TU432596 other downstream 431939 360910 ~ 366991 (-) True CI01000186_00360860_00361637
TU432581 other downstream 550846 245373 ~ 248084 (-) True CI01000186_00240507_00248051
TU432571 other downstream 575166 217476 ~ 217536 (-) True G378411

Expression Profile