RNA id: CI01000186_00842940_00858572.mRNA


Basic Information

Item Value
RNA id CI01000186_00842940_00858572.mRNA
length 2080
RNA type mRNA
GC content 0.44
exon number 10
gene id CI01000186_00842940_00858572
representative True

Chromosome Information

Item Value
chromosome id CI01000186
NCBI id null
chromosome length 966831
location 842277 ~ 858696 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AATGGCCATCTGATATCAAACCTTTCAACTTGACACCACAATAACACTTGTGGCTTTTGCTGACAAATGGCAAAGCCCTGATGGCATAGCTGACCGACCAGCTATATTTGTGTAAAGTCCTAATATGACCACCCTTAGGGAAAGATGCCTTTTTTATGGAGCACATGTCCCCTTCTCATTAGGTGTCGACGCCTTAGAATTTATTCCACAGCCTCCTGCCATCTTTTCAAAGGAATTAGGAAAGCATGTTGGACACATTGCATTGTCCTTGCAAGGCAAAGCAAAAGAACATGAGCAGGATCCAAGATACAAAGTATTAAATGCTAGCGTCATCCCTGAGGGCCAGTTCATTGACAACAAAAAGGCTTCAGAGAAACTCTTGGGCTCTATTGATGTTGACCACACCCAATACAAGTTTGGGCACACCAAGGTGTTCTTCAAAGCTGGTCTGTTGGGTACTCTTGAGGAGATGAGAGATGAGAAACTAGCAACACTGGTTACCATGACTCAGGCTTTGTGCCGTGGATTTGTCATGAGGAAGGAGTTTGTCAAAATGATGGAAAGGAGAGGACAGGAGGACATGAAGGAGCAGGTGGCCATGGTGGAGCGCAGGAATAACCTGATGCAAGCAGAGATTGAGGAGCTGAGAGCTGCACTGGAGCAAACAGAGAGAGGCCGCAAAGTGGCGGAGCAGGAGCTGGTTGATGCCAGCGAGCGTGTGGGACTGCTGCACTCACAAAATACAAGTCTTATTAACACCAAGAAGAAGCTCGAGGCTGATCTGGTCCAGGTTCAAGGTGAGGTGGATGATTCAGTCCAGGAGGCCAGAAATGCAGAGGAGAAGGCCAAGAAGGCCATCACTGATGCTGCCATGATGGCTGAGGAGCTGAAGAAGGAGCAGGACACCAGTGCTCACCTGGAGAGGATGAAGAAGAACCTGGAGGTGACTGTCAAAGACCTGCAGCACCGTCTGGATGAGGCTGAAAGTCTGGCCATGAAGGGTGGAAAGAAACAGCTCCAGAAACTGGAGTCCAGGGTGCGTGAGTTAGAGTCTGAAGTTGAAGCTGAGCAGAGACGTGGTGCAGACGCTGTGAAAGGAGTGCGCAAATATGAGAGGAGGGTGAAGGAGCTCACCTACCAGACTGAGGAAGACAAGAAGAACGTGACCCGACTGCAGGATCTGGTAGACAAGCTGCAGCTGAAAGTGAAGGCCTACAAGCGCCAGGCTGAAGAAGCTGAGGAGCAGGCCAACACTCACCTGTCCAGGTACAGGAAGGTGCAGCATGAGCTGGAGGAGGCTCAGGAGCGCGCTGACATCGCCGAGTCCCAGGTCAACAAGCTGAGGGCCAAGAGCCGTGAAGCTGGAAAGACTGGTAGAGTATGGCACCAATGCCAAGATCACTGGTTTCCTAACTGACAACCAATGTTAAAATTAGAATGGATAAGTGTCTGTAACCCATTAAAAGTAACAAAATCTGTTTTCCAGGGGTTTAACTTTACATGCGCATATAGCAGCATAAACAACTGAACTTGTGGATTCACACATCATCACATCACACACCTGCAGTGCTTCTGTGAATGGAGAAAAACTGAATAAAAGTATATATATAAAAGGAATAAATATATTTCACTTAAATAATTAACAGATTAATGAAACGAAAGAAAAAACGGTTTCGACAAATAGTATATGCTGAGTTTCACTTTATTTTTGCGACGCACTCCACAAACAAGTTCACAGAAAAGAAACCAATACGGCAGAACGTGGCATCCTGTTTATTTTCTTTATTTTACAAAAACACGTTTATATTGTGAGTGTACACAAATAAAAGTAGACCCTTTACCCTCTCAAAAACTTAATTTTATATGTGTAGCATATTTTTGTTAACCATGTAGCAAACATTTTCAATATATCTTAAAATTAGCCTACTTTAAAAATTATTTAAATTAGTCTACTTTTTAAGCCATTGAGCCAATAGTATTAATCAGACAAAATTCTTACTGTCAGTTAATGGTTAACCAGTTATTATGAGCATCCCTAGTATTTAAAATAATTAATGCACATAACATTGTGTGAAATAAA

Function

GO:

id name namespace
GO:0000166 nucleotide binding molecular_function

KEGG:

id description
K10352 MYH9s; myosin heavy chain 9/10/11/14

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU432840 lncRNA downstream 33877 808171 ~ 808400 (-) True G378634
TU432725 lncRNA downstream 39964 801075 ~ 802313 (-) True G378546
TU432726 lncRNA downstream 39964 800682 ~ 802313 (-) True G378546
TU432837 lncRNA downstream 82063 759893 ~ 760214 (-) True G378631
TU432835 lncRNA downstream 90864 751210 ~ 751413 (-) True CI01000186_00749734_00761177
TU432878 lncRNA upstream 83593 942289 ~ 946294 (-) True G378670
CI01000186_00815815_00829935.mRNA mRNA downstream 10975 815732 ~ 831302 (-) True CI01000186_00815815_00829935
CI01000186_00804745_00805695.mRNA mRNA downstream 36524 804644 ~ 805753 (-) True CI01000186_00804745_00805695
CI01000186_00799178_00799351.mRNA mRNA downstream 42926 798945 ~ 799351 (-) False CI01000186_00799178_00799351
CI01000186_00777653_00779924.mRNA mRNA downstream 60120 776720 ~ 782157 (-) True CI01000186_00777653_00779924
CI01000186_00768176_00773034.mRNA mRNA downstream 69175 767681 ~ 773102 (-) True CI01000186_00768176_00773034
CI01000186_00873286_00934953.mRNA mRNA upstream 14435 873131 ~ 934953 (-) True CI01000186_00873286_00934953
CI01000186_00956103_00957823.mRNA mRNA upstream 97407 956103 ~ 957823 (-) True CI01000186_00956103_00957823
TU432574 other downstream 353794 488357 ~ 488483 (-) True G378414
TU432687 other downstream 445522 396258 ~ 396755 (-) True G378509
TU432596 other downstream 475286 360910 ~ 366991 (-) True CI01000186_00360860_00361637
TU432581 other downstream 594193 245373 ~ 248084 (-) True CI01000186_00240507_00248051
TU432571 other downstream 618513 217476 ~ 217536 (-) True G378411

Expression Profile