RNA id: TU432150


Basic Information

Item Value
RNA id TU432150
length 390
RNA type TUCP
GC content 0.46
exon number 2
gene id G378108
representative False

Chromosome Information

Item Value
chromosome id CI01000186
NCBI id null
chromosome length 966831
location 11415 ~ 15229 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AAACATCAGCTACTCGAGTCAACCAGAACGACTGACACACTTAAATGAAGCACAACAGTCAAACGCTTGTTTTTACACATACAAATTTATTTGTCATAATTCAGGCTCTACTCCTTCTTGGCAGCAGCTTTCCTCATGGCAGCCAGAATGTTGCTGAGCTCTTCCCTCTTTCTCTTGGCACGGATGTGAGTTCCCACCCTTTTCTTGATGAACTTGAGGGCACGTTTGTCCTTGGACACCTTCAGCAACTCCATGGCACGCCTCTCGTAGGGCGCGAAACCGCACACCTCACGGATCATGTCGCGCACAAACTTGGTGTGCTTGGTCAGACGCTGAAACGCAAAAAATATGTTACGTTAAATACGATTACACTGGTATAATAAGGTGTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU432181 lncRNA downstream 1996 15491 ~ 15968 (+) True G378128
TU432183 lncRNA downstream 16001 29496 ~ 29721 (+) True G378130
TU432184 lncRNA downstream 16981 30476 ~ 31024 (+) True G378131
TU432187 lncRNA downstream 20463 33958 ~ 34226 (+) True G378134
TU432189 lncRNA downstream 21946 35441 ~ 35705 (+) True G378136
CI01000186_00000433_00010367.mRNA mRNA upstream 722 433 ~ 10693 (+) True CI01000186_00000433_00010367
CI01000186_00016608_00025920.mRNA mRNA downstream 3113 16608 ~ 26754 (+) True CI01000186_00016608_00025920
CI01000186_00091411_00095100.mRNA mRNA downstream 77484 90979 ~ 95538 (+) True CI01000186_00091411_00095100
CI01000186_00098106_00099994.mRNA mRNA downstream 83681 97176 ~ 100163 (+) True CI01000186_00098106_00099994
CI01000186_00102313_00108968.mRNA mRNA downstream 88617 102112 ~ 109867 (+) True CI01000186_00102313_00108968
CI01000186_00111894_00116331.mRNA mRNA downstream 98399 111894 ~ 116838 (+) True CI01000186_00111894_00116331
TU432362 other downstream 398325 411820 ~ 411920 (+) False G378256
TU432363 other downstream 398325 411820 ~ 414878 (+) False G378256
TU432364 other downstream 398325 411820 ~ 414878 (+) False G378256
TU432365 other downstream 398325 411820 ~ 411920 (+) True G378256
TU432491 other downstream 881013 894508 ~ 896717 (+) True G378343

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
rainbow trout (Oncorhynchus mykiss) TU2559011 True 1780 lncRNA 0.42 2 NC_050570.1 43315132 ~ 43317407 (-)