RNA id: TU432151


Basic Information

Item Value
RNA id TU432151
length 680
lncRNA type antisense_over
GC content 0.45
exon number 3
gene id G378108
representative True

Chromosome Information

Item Value
chromosome id CI01000186
NCBI id null
chromosome length 966831
location 11415 ~ 15229 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AAACATCAGCTACTCGAGTCAACCAGAACGACTGACACACTTAAATGAAGCACAACAGTCAAACGCTTGTTTTTACACATACAAATTTATTTGTCATAATTCAGGCTCTACTCCTTCTTGGCAGCAGCTTTCCTCATGGCAGCCAGAATGTTGCTGAGCTCTTCCCTCTTTCTCTTGGCACGGATGTGAGTTCCCACCTTTTCTTGATGAACTTGAGGGCACGTTTGTCCTTGGACACCTTCAGCAACTCCATGGCACGCCTCTCGTAGGGCGCGAAACCGCACACCTCACGGATCATGTCGCGCACAAACTTGGTGTGCTTGGTCAGACGCCTCTCCTGCGGCTGTGCTTGGGCTTCGTAACGTTTTTGGTCACTGGATGGCCTTTGTTAAGGCCAACCGCCATAGGATACCTGATGGCCATCTCTGTGGAGAGCAAATGTGATTAAACATACATGAATACTCTGACACAAGCTGCATGTGTGCTTATGGATTAGACATTAGTGGTCTTTACGAGATCAAAGTCATTAAATACCACCATTTCATGATTAGGGAGAATACAGTTAACATTTTATACACGTTTTGTGTTTAAAGCTTCTAAACTGCAGTTAATTTATAACGAGTGTTTGAGAAGGACTTCACTGCATCTACTCTTGAGTGAAACCCTCCAAAACACACAAA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU432181 lncRNA downstream 439 15491 ~ 15968 (+) True G378128
TU432183 lncRNA downstream 14444 29496 ~ 29721 (+) True G378130
TU432184 lncRNA downstream 15424 30476 ~ 31024 (+) True G378131
TU432187 lncRNA downstream 18906 33958 ~ 34226 (+) True G378134
TU432189 lncRNA downstream 20389 35441 ~ 35705 (+) True G378136
CI01000186_00000433_00010367.mRNA mRNA upstream 722 433 ~ 10693 (+) True CI01000186_00000433_00010367
CI01000186_00016608_00025920.mRNA mRNA downstream 1556 16608 ~ 26754 (+) True CI01000186_00016608_00025920
CI01000186_00091411_00095100.mRNA mRNA downstream 75927 90979 ~ 95538 (+) True CI01000186_00091411_00095100
CI01000186_00098106_00099994.mRNA mRNA downstream 82124 97176 ~ 100163 (+) True CI01000186_00098106_00099994
CI01000186_00102313_00108968.mRNA mRNA downstream 87060 102112 ~ 109867 (+) True CI01000186_00102313_00108968
CI01000186_00111894_00116331.mRNA mRNA downstream 96842 111894 ~ 116838 (+) True CI01000186_00111894_00116331
TU432362 other downstream 396768 411820 ~ 411920 (+) False G378256
TU432363 other downstream 396768 411820 ~ 414878 (+) False G378256
TU432364 other downstream 396768 411820 ~ 414878 (+) False G378256
TU432365 other downstream 396768 411820 ~ 411920 (+) True G378256
TU432491 other downstream 879456 894508 ~ 896717 (+) True G378343

Expression Profile