RNA id: TU432190


Basic Information

Item Value
RNA id TU432190
length 234
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G378137
representative True

Chromosome Information

Item Value
chromosome id CI01000186
NCBI id null
chromosome length 966831
location 36442 ~ 36675 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CCACAAACAGATGTTTAATTAGCATTGTCAGCAAACTTCCATGGCCAACTAGCTTAATTTTAACTAATCTACTTCTGAATGTATGCACACATATTCCTCTTCTGGAAAAACTTACCACCAAGATGCTTAACTAGCAAAGCCAGCAAAACTTCTATGGTCAATCAGCATCGTCAGAAAAACCATGCTGGTAGACGAGGTGATCAACATGGTTGTTGTTGTTCCGAAATCTAGACC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU432189 lncRNA upstream 737 35441 ~ 35705 (+) True G378136
TU432187 lncRNA upstream 2216 33958 ~ 34226 (+) True G378134
TU432184 lncRNA upstream 5418 30476 ~ 31024 (+) True G378131
TU432183 lncRNA upstream 6721 29496 ~ 29721 (+) True G378130
TU432181 lncRNA upstream 20474 15491 ~ 15968 (+) True G378128
TU432198 lncRNA downstream 15505 52180 ~ 52481 (+) True G378145
TU432199 lncRNA downstream 15948 52623 ~ 52847 (+) True G378146
TU432200 lncRNA downstream 16199 52874 ~ 53098 (+) True G378147
TU432202 lncRNA downstream 16675 53350 ~ 53705 (+) False G378148
TU432204 lncRNA downstream 16675 53350 ~ 53763 (+) False G378148
CI01000186_00016608_00025920.mRNA mRNA upstream 9688 16608 ~ 26754 (+) True CI01000186_00016608_00025920
CI01000186_00000433_00010367.mRNA mRNA upstream 25749 433 ~ 10693 (+) True CI01000186_00000433_00010367
CI01000186_00091411_00095100.mRNA mRNA downstream 54304 90979 ~ 95538 (+) True CI01000186_00091411_00095100
CI01000186_00098106_00099994.mRNA mRNA downstream 60501 97176 ~ 100163 (+) True CI01000186_00098106_00099994
CI01000186_00102313_00108968.mRNA mRNA downstream 65437 102112 ~ 109867 (+) True CI01000186_00102313_00108968
CI01000186_00111894_00116331.mRNA mRNA downstream 75219 111894 ~ 116838 (+) True CI01000186_00111894_00116331
CI01000186_00120791_00130397.mRNA mRNA downstream 84116 120791 ~ 130397 (+) True CI01000186_00120791_00130397
TU432150 other upstream 22947 11415 ~ 13495 (+) False G378108
TU432362 other downstream 375145 411820 ~ 411920 (+) False G378256
TU432363 other downstream 375145 411820 ~ 414878 (+) False G378256
TU432364 other downstream 375145 411820 ~ 414878 (+) False G378256
TU432365 other downstream 375145 411820 ~ 411920 (+) True G378256
TU432491 other downstream 857833 894508 ~ 896717 (+) True G378343

Expression Profile