RNA id: TU432199


Basic Information

Item Value
RNA id TU432199
length 225
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G378146
representative True

Chromosome Information

Item Value
chromosome id CI01000186
NCBI id null
chromosome length 966831
location 52623 ~ 52847 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTACAGTTTTTTTAAATTGCACATCATGTACAGTACGCCTCCTCTCCCTAAACACACTCACCAAGTCCGCATTCTGGGTTTAAAAAAATTCTTAATTACACTCACTGTCAGAGACGTGGTCTTCTTTTCCTGCGTGAGTCATTTCCCTACTGACACAAAAGACCAACTTTAGCCCTGTGAGCACTTTCTCAGCTGTGCACCAGAGCAAGACGATAGCAGTCACTT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU432198 lncRNA upstream 142 52180 ~ 52481 (+) True G378145
TU432190 lncRNA upstream 15948 36442 ~ 36675 (+) True G378137
TU432189 lncRNA upstream 16918 35441 ~ 35705 (+) True G378136
TU432187 lncRNA upstream 18397 33958 ~ 34226 (+) True G378134
TU432184 lncRNA upstream 21599 30476 ~ 31024 (+) True G378131
TU432200 lncRNA downstream 27 52874 ~ 53098 (+) True G378147
TU432202 lncRNA downstream 503 53350 ~ 53705 (+) False G378148
TU432204 lncRNA downstream 503 53350 ~ 53763 (+) False G378148
TU432201 lncRNA downstream 628 53475 ~ 53705 (+) False G378148
TU432203 lncRNA downstream 628 53475 ~ 53763 (+) True G378148
CI01000186_00016608_00025920.mRNA mRNA upstream 25869 16608 ~ 26754 (+) True CI01000186_00016608_00025920
CI01000186_00000433_00010367.mRNA mRNA upstream 41930 433 ~ 10693 (+) True CI01000186_00000433_00010367
CI01000186_00091411_00095100.mRNA mRNA downstream 38132 90979 ~ 95538 (+) True CI01000186_00091411_00095100
CI01000186_00098106_00099994.mRNA mRNA downstream 44329 97176 ~ 100163 (+) True CI01000186_00098106_00099994
CI01000186_00102313_00108968.mRNA mRNA downstream 49265 102112 ~ 109867 (+) True CI01000186_00102313_00108968
CI01000186_00111894_00116331.mRNA mRNA downstream 59047 111894 ~ 116838 (+) True CI01000186_00111894_00116331
CI01000186_00120791_00130397.mRNA mRNA downstream 67944 120791 ~ 130397 (+) True CI01000186_00120791_00130397
TU432150 other upstream 39128 11415 ~ 13495 (+) False G378108
TU432362 other downstream 358973 411820 ~ 411920 (+) False G378256
TU432363 other downstream 358973 411820 ~ 414878 (+) False G378256
TU432364 other downstream 358973 411820 ~ 414878 (+) False G378256
TU432365 other downstream 358973 411820 ~ 411920 (+) True G378256
TU432491 other downstream 841661 894508 ~ 896717 (+) True G378343

Expression Profile