RNA id: TU432203


Basic Information

Item Value
RNA id TU432203
length 289
lncRNA type inter_gene
GC content 0.49
exon number 1
gene id G378148
representative True

Chromosome Information

Item Value
chromosome id CI01000186
NCBI id null
chromosome length 966831
location 53350 ~ 53763 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTTTTGCTGCCAAAACAGCCCTGACCCGTCGAGGCATGGACTCCTCTAGACCCCTGAAGGTGTGCTGTGGTATCTGCACCAAGATGTTAGCAGCAGATCCTTTAAGTCCTGTAAGTTGTGAGGTGGAGCCTCCATGGATCAGACTTGTTTGTTCAGCACATCCCACAGATGCTCGATTGGATTGAGATCTGGGGAATTTGGAGGCCAAGACAACACCTCAAACTCGTTGTTGTGCTCCTCAAACCATTACTGAACCATTTTTGCTTTGTGGCAGGACACATTATCCTGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU432200 lncRNA upstream 377 52874 ~ 53098 (+) True G378147
TU432199 lncRNA upstream 628 52623 ~ 52847 (+) True G378146
TU432198 lncRNA upstream 994 52180 ~ 52481 (+) True G378145
TU432190 lncRNA upstream 16800 36442 ~ 36675 (+) True G378137
TU432189 lncRNA upstream 17770 35441 ~ 35705 (+) True G378136
TU432242 lncRNA downstream 99302 153065 ~ 153273 (+) True G378184
TU432255 lncRNA downstream 104576 158339 ~ 158576 (+) True G378187
TU432169 lncRNA downstream 109211 162974 ~ 165447 (+) True G378117
TU432284 lncRNA downstream 191667 245430 ~ 245978 (+) False G378204
TU432285 lncRNA downstream 191667 245430 ~ 248174 (+) True G378204
CI01000186_00016608_00025920.mRNA mRNA upstream 26721 16608 ~ 26754 (+) True CI01000186_00016608_00025920
CI01000186_00000433_00010367.mRNA mRNA upstream 42782 433 ~ 10693 (+) True CI01000186_00000433_00010367
CI01000186_00091411_00095100.mRNA mRNA downstream 37216 90979 ~ 95538 (+) True CI01000186_00091411_00095100
CI01000186_00098106_00099994.mRNA mRNA downstream 43413 97176 ~ 100163 (+) True CI01000186_00098106_00099994
CI01000186_00102313_00108968.mRNA mRNA downstream 48349 102112 ~ 109867 (+) True CI01000186_00102313_00108968
CI01000186_00111894_00116331.mRNA mRNA downstream 58131 111894 ~ 116838 (+) True CI01000186_00111894_00116331
CI01000186_00120791_00130397.mRNA mRNA downstream 67028 120791 ~ 130397 (+) True CI01000186_00120791_00130397
TU432150 other upstream 39980 11415 ~ 13495 (+) False G378108
TU432362 other downstream 358057 411820 ~ 411920 (+) False G378256
TU432363 other downstream 358057 411820 ~ 414878 (+) False G378256
TU432364 other downstream 358057 411820 ~ 414878 (+) False G378256
TU432365 other downstream 358057 411820 ~ 411920 (+) True G378256
TU432491 other downstream 840745 894508 ~ 896717 (+) True G378343

Expression Profile