RNA id: TU432616


Basic Information

Item Value
RNA id TU432616
length 205
lncRNA type inter_gene
GC content 0.29
exon number 1
gene id G378453
representative True

Chromosome Information

Item Value
chromosome id CI01000186
NCBI id null
chromosome length 966831
location 111292 ~ 111496 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AAAATATTTAATAAAAGAAAACACGTAATTTACGTTGAGTTTACATTGATAGGAGACTGCAGACTGCACTTCGGCTGATCTTACAGGCTTGGAATACTACTAACAAGTTTAAAACTTTTACATACGAAAATTTACATAATTTACATAAGAAAAAACAAAAGAAATAGAGATTTTTGTTGTTGATATTTCATTAGTTGAAGGTGGG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU432578 lncRNA downstream 57608 53467 ~ 53684 (-) True G378418
TU432604 lncRNA downstream 80306 30676 ~ 30986 (-) True G378444
TU432617 lncRNA upstream 1168 112664 ~ 112887 (-) True G378454
TU432618 lncRNA upstream 2872 114368 ~ 116870 (-) True G378455
TU432621 lncRNA upstream 6300 117796 ~ 118319 (-) True G378457
TU432620 lncRNA upstream 8245 119741 ~ 120168 (-) True G378456
TU432648 lncRNA upstream 104286 215782 ~ 216043 (-) True G378476
CI01000186_00095947_00097088.mRNA mRNA downstream 14150 95645 ~ 97142 (-) True CI01000186_00095947_00097088
CI01000186_00087531_00090364.mRNA mRNA downstream 20801 87493 ~ 90491 (-) True CI01000186_00087531_00090364
CI01000186_00039365_00051758.mRNA mRNA downstream 58806 39303 ~ 52486 (-) True CI01000186_00039365_00051758
CI01000186_00011522_00015307.mRNA mRNA downstream 95985 11500 ~ 15307 (-) True CI01000186_00011522_00015307
CI01000186_00144110_00151887.mRNA mRNA upstream 32166 143662 ~ 151887 (-) True CI01000186_00144110_00151887
CI01000186_00156270_00161766.mRNA mRNA upstream 44687 156183 ~ 161766 (-) True CI01000186_00156270_00161766
CI01000186_00165206_00167364.mRNA mRNA upstream 53546 165042 ~ 167459 (-) True CI01000186_00165206_00167364
CI01000186_00175457_00185420.mRNA mRNA upstream 63703 175199 ~ 185420 (-) True CI01000186_00175457_00185420
CI01000186_00215443_00223579.mRNA mRNA upstream 103903 215399 ~ 223579 (-) False CI01000186_00215443_00223579
TU432622 other upstream 9186 120682 ~ 121425 (-) True G378458
TU432635 other upstream 80674 192170 ~ 193760 (-) True G378466
TU432571 other upstream 105980 217476 ~ 217536 (-) True G378411
TU432581 other upstream 133877 245373 ~ 248084 (-) True CI01000186_00240507_00248051
TU432596 other upstream 249414 360910 ~ 366991 (-) True CI01000186_00360860_00361637

Expression Profile