RNA id: TU432618


Basic Information

Item Value
RNA id TU432618
length 864
lncRNA type antisense_over
GC content 0.42
exon number 2
gene id G378455
representative True

Chromosome Information

Item Value
chromosome id CI01000186
NCBI id null
chromosome length 966831
location 114368 ~ 116870 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GCAATTATGGAAGACTAAAAAAATGTATTTATTGTAGCTATTGTGACATTGTGGCACACTTGCAATGTTTTATGAGTGCCATTTATACACAACGCATCCCAATGTTCATACTTTAACTTTTATATGCAATTACTTTTTTACCCTTTGTCTCTTTTTTCATTAGCAAACCGGCCAATCAGGTACTAAATTGTACAACTGACGTATAATGCCACCTGCTCTTAAATATTATTTGCTATATATTAAATTAAATGTCCATATAACTTAAGCCGGCTTGTCTATTCTTTGGCTCATGGATATTAGTAGAAATTTCACATCTGACAACTAGAACAAACTCAACATTTTTACTCTGTGTAACAGGATAGATTTAAGTAGACACCTGATGTAATGGACAAAGTGTTTTCGTAACTTAAGGGGTTTGTTGCAACTGGCTGCACCTTAACCCAGTCGAACAGATTTAACATTTAACCATGTTTTGTGACAGTAAAATCTGTTTTACAAAGAGACCATATCAGTGCTGGTTTTAATGTCTGTCAGTCGTCTTAGTTTGTCTTGTCTTCAGAAGTTTTCCCTTTGGGCACCCGGAAGATGATGGCATGAACGGTGATGGAGAGGAAAAGCATAGTGATGGCCACGTCAGGCCCAAGCGCACCGGCCCACTGACCGACCTCCGCAATGGTGTCCACTTCAAGCCTACAGGCGGCGAGTGCGAAGGCGGCGATGAACTCTGTCAGGAAAGTCCATCGCGGCCTCCATCGAGCGAACAGCACCCTTCCGACTGCACTTACACCTACTATAGCTAAGAAGTAGCCCAGCGATGCATTAAGCCCTGACATGATGTTCAAACAGTGTAGTGCACAGCTAGCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU432617 lncRNA downstream 1481 112664 ~ 112887 (-) True G378454
TU432616 lncRNA downstream 2872 111292 ~ 111496 (-) True G378453
TU432578 lncRNA downstream 60684 53467 ~ 53684 (-) True G378418
TU432604 lncRNA downstream 83382 30676 ~ 30986 (-) True G378444
TU432621 lncRNA upstream 926 117796 ~ 118319 (-) True G378457
TU432620 lncRNA upstream 2871 119741 ~ 120168 (-) True G378456
TU432648 lncRNA upstream 98912 215782 ~ 216043 (-) True G378476
TU432559 lncRNA upstream 120268 240855 ~ 241071 (-) True G378399
TU432658 lncRNA upstream 184016 300886 ~ 301234 (-) True G378480
CI01000186_00095947_00097088.mRNA mRNA downstream 17226 95645 ~ 97142 (-) True CI01000186_00095947_00097088
CI01000186_00087531_00090364.mRNA mRNA downstream 23877 87493 ~ 90491 (-) True CI01000186_00087531_00090364
CI01000186_00039365_00051758.mRNA mRNA downstream 61882 39303 ~ 52486 (-) True CI01000186_00039365_00051758
CI01000186_00011522_00015307.mRNA mRNA downstream 99061 11500 ~ 15307 (-) True CI01000186_00011522_00015307
CI01000186_00144110_00151887.mRNA mRNA upstream 26792 143662 ~ 151887 (-) True CI01000186_00144110_00151887
CI01000186_00156270_00161766.mRNA mRNA upstream 39313 156183 ~ 161766 (-) True CI01000186_00156270_00161766
CI01000186_00165206_00167364.mRNA mRNA upstream 48172 165042 ~ 167459 (-) True CI01000186_00165206_00167364
CI01000186_00175457_00185420.mRNA mRNA upstream 58329 175199 ~ 185420 (-) True CI01000186_00175457_00185420
CI01000186_00215443_00223579.mRNA mRNA upstream 98529 215399 ~ 223579 (-) False CI01000186_00215443_00223579
TU432622 other upstream 3812 120682 ~ 121425 (-) True G378458
TU432635 other upstream 75300 192170 ~ 193760 (-) True G378466
TU432571 other upstream 100606 217476 ~ 217536 (-) True G378411
TU432581 other upstream 128503 245373 ~ 248084 (-) True CI01000186_00240507_00248051
TU432596 other upstream 244040 360910 ~ 366991 (-) True CI01000186_00360860_00361637

Expression Profile