RNA id: TU432658


Basic Information

Item Value
RNA id TU432658
length 349
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G378480
representative True

Chromosome Information

Item Value
chromosome id CI01000186
NCBI id null
chromosome length 966831
location 300886 ~ 301234 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TGAATGATGTTTGTGAAACTCCAGGAGCGTTCGGCTCAACAGGTTTGATTTGCAAATCATTTGTGTGTGAGTCTCTGATCCAGAAACCCACCGGCGTGAAAATGCCAAATGCAAATCACATCAATCTCATTGACAAACACACACCCAAACCCCCAGCAGACCTGACCAGACGACAAACACAAGAATCGCCACTAAAACAATCCTGGAGATTTATCTTTGTTCGTGCAATCACATGGTTTTTCATTTAGGAACAGAAAATGGTTACAAAATAGTAACATTTGTAAAATATGTATAACAGTCTTAAATCTTTCTTAAAATTAAAGTTCGTTCTTCAATTTCTGTCGTGACG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU432559 lncRNA downstream 59815 240855 ~ 241071 (-) True G378399
TU432648 lncRNA downstream 84843 215782 ~ 216043 (-) True G378476
TU432620 lncRNA downstream 180718 119741 ~ 120168 (-) True G378456
TU432621 lncRNA downstream 182567 117796 ~ 118319 (-) True G378457
TU432618 lncRNA downstream 184016 114368 ~ 116870 (-) True G378455
TU432659 lncRNA upstream 977 302211 ~ 302489 (-) True G378481
TU432660 lncRNA upstream 21295 322529 ~ 322781 (-) True G378482
TU432695 lncRNA upstream 143154 444388 ~ 444877 (-) True G378517
TU432698 lncRNA upstream 146875 448109 ~ 448422 (-) True G378520
TU432700 lncRNA upstream 149802 451036 ~ 451418 (-) True G378522
CI01000186_00281889_00289711.mRNA mRNA downstream 10406 280912 ~ 290480 (-) True CI01000186_00281889_00289711
CI01000186_00261713_00270433.mRNA mRNA downstream 30376 261423 ~ 270510 (-) True CI01000186_00261713_00270433
CI01000186_00259516_00260745.mRNA mRNA downstream 39697 259416 ~ 261189 (-) True CI01000186_00259516_00260745
CI01000186_00240507_00248051.mRNA mRNA downstream 52835 240329 ~ 248051 (-) False CI01000186_00240507_00248051
CI01000186_00238503_00238674.mRNA mRNA downstream 62212 238470 ~ 238674 (-) False CI01000186_00238503_00238674
CI01000186_00304422_00316712.mRNA mRNA upstream 3084 304318 ~ 316863 (-) True CI01000186_00304422_00316712
CI01000186_00318098_00318475.mRNA mRNA upstream 16494 317728 ~ 318475 (-) True CI01000186_00318098_00318475
CI01000186_00340443_00342720.mRNA mRNA upstream 39037 340271 ~ 342966 (-) True CI01000186_00340443_00342720
CI01000186_00360860_00361637.mRNA mRNA upstream 59406 360640 ~ 362700 (-) False CI01000186_00360860_00361637
CI01000186_00408656_00408943.mRNA mRNA upstream 106901 408135 ~ 408943 (-) True CI01000186_00408656_00408943
TU432581 other downstream 52802 245373 ~ 248084 (-) True CI01000186_00240507_00248051
TU432571 other downstream 77122 217476 ~ 217536 (-) True G378411
TU432635 other downstream 107126 192170 ~ 193760 (-) True G378466
TU432622 other downstream 179461 120682 ~ 121425 (-) True G378458
TU432596 other upstream 59676 360910 ~ 366991 (-) True CI01000186_00360860_00361637
TU432687 other upstream 95024 396258 ~ 396755 (-) True G378509
TU432574 other upstream 184562 488357 ~ 488483 (-) True G378414

Expression Profile