RNA id: TU432695


Basic Information

Item Value
RNA id TU432695
length 490
lncRNA type antisense_over
GC content 0.26
exon number 1
gene id G378517
representative True

Chromosome Information

Item Value
chromosome id CI01000186
NCBI id null
chromosome length 966831
location 444388 ~ 444877 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTTGACTCACGTTTTAGTTATTTTACCATATGCTCCTGTCATTTTTATTAGTTTGTGTTCATATTAAATATTTCTACCTAATTGATTTTTATTTTAGTACTTAAAAAATATAAAACAAACTTAAATTAAGTTCAAGTTATCCATCTAATATTTATCTTTGATTTTATTTCAATTAACCAAAAGAATTTCTAATAGTTTCAGTTAACAATAATAACAGTTACAGTCAAAGTTCAGTTTCTTCTCTGTGATCTGATAATTAGTACAGTGATGTTTTCTTTATCAGTCACAAATATAATTAAACCAGAAATTATTTGTTTGCAGTGAAGTCAAGGATGTCCCATTTTCCCTTTTCTGTTTATCTTAGCGGTAAAAAAATGCTTGTTATCTTGATAGATAAAAATAGCAACTTTGATAAACTGAATGTGTTTGGTTTAAAAAAAAACAACAACAAAAGATTATTTCCAGTAAACTCAAGTAGTCAAATCTCAGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU432660 lncRNA downstream 121607 322529 ~ 322781 (-) True G378482
TU432659 lncRNA downstream 141899 302211 ~ 302489 (-) True G378481
TU432658 lncRNA downstream 143154 300886 ~ 301234 (-) True G378480
TU432559 lncRNA downstream 203317 240855 ~ 241071 (-) True G378399
TU432648 lncRNA downstream 228345 215782 ~ 216043 (-) True G378476
TU432698 lncRNA upstream 3232 448109 ~ 448422 (-) True G378520
TU432700 lncRNA upstream 6159 451036 ~ 451418 (-) True G378522
TU432717 lncRNA upstream 90829 535706 ~ 535908 (-) True G378539
TU432718 lncRNA upstream 91316 536193 ~ 536507 (-) True G378540
TU432719 lncRNA upstream 91752 536629 ~ 536950 (-) True G378541
CI01000186_00433415_00435816.mRNA mRNA downstream 8394 432833 ~ 435994 (-) True CI01000186_00433415_00435816
CI01000186_00408656_00408943.mRNA mRNA downstream 35445 408135 ~ 408943 (-) True CI01000186_00408656_00408943
CI01000186_00360860_00361637.mRNA mRNA downstream 81688 360640 ~ 362700 (-) False CI01000186_00360860_00361637
CI01000186_00340443_00342720.mRNA mRNA downstream 101422 340271 ~ 342966 (-) True CI01000186_00340443_00342720
CI01000186_00318098_00318475.mRNA mRNA downstream 125913 317728 ~ 318475 (-) True CI01000186_00318098_00318475
CI01000186_00453106_00464818.mRNA mRNA upstream 7215 452092 ~ 464818 (-) True CI01000186_00453106_00464818
CI01000186_00485805_00522951.mRNA mRNA upstream 40928 485805 ~ 523767 (-) False CI01000186_00485805_00522951
CI01000186_00525649_00532282.mRNA mRNA upstream 80679 525556 ~ 532353 (-) True CI01000186_00525649_00532282
CI01000186_00588218_00590230.mRNA mRNA upstream 143341 588218 ~ 590804 (-) True CI01000186_00588218_00590230
CI01000186_00640328_00644798.mRNA mRNA upstream 194295 639172 ~ 648186 (-) True CI01000186_00640328_00644798
TU432687 other downstream 47633 396258 ~ 396755 (-) True G378509
TU432596 other downstream 77397 360910 ~ 366991 (-) True CI01000186_00360860_00361637
TU432581 other downstream 196304 245373 ~ 248084 (-) True CI01000186_00240507_00248051
TU432571 other downstream 220624 217476 ~ 217536 (-) True G378411
TU432635 other downstream 250628 192170 ~ 193760 (-) True G378466
TU432574 other upstream 40919 488357 ~ 488483 (-) True G378414

Expression Profile