RNA id: TU432719


Basic Information

Item Value
RNA id TU432719
length 322
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G378541
representative True

Chromosome Information

Item Value
chromosome id CI01000186
NCBI id null
chromosome length 966831
location 536629 ~ 536950 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTCACAGCGTAAGAGCTTCAAGATTTCAGTTTGGCAGAATGCGAGTCTAAACACACACACACATGCGAGCAGCGGCCCTGAGGGTAAAACTGCTCTCTAATCCTTCATTTCTCCATCCGTCCAGCTCATATTATCAGTCTGCCATCTTTTTTCACTTTTTGCTCTAGATGTTTTACGATTCAGTCTCATACAGGACAGAGAAGTTAAATCAAACACATTAAAAACACGTGTGGATCTGACCCCGACACGCCAACACACACACAGCAAGGCTTGCAACAAACTACATGAACGCAAAGCTTGTGTTCCAAAATGAGCGCAATTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU432718 lncRNA downstream 122 536193 ~ 536507 (-) True G378540
TU432717 lncRNA downstream 721 535706 ~ 535908 (-) True G378539
TU432700 lncRNA downstream 85211 451036 ~ 451418 (-) True G378522
TU432698 lncRNA downstream 88207 448109 ~ 448422 (-) True G378520
TU432695 lncRNA downstream 91752 444388 ~ 444877 (-) True G378517
TU432774 lncRNA upstream 46203 583153 ~ 583369 (-) True G378591
TU432773 lncRNA upstream 47901 584851 ~ 585279 (-) True G378590
TU432775 lncRNA upstream 48895 585845 ~ 586096 (-) True G378592
TU432744 lncRNA upstream 100699 637649 ~ 639093 (-) True G378564
TU432740 lncRNA upstream 116853 653803 ~ 654892 (-) True G378560
CI01000186_00525649_00532282.mRNA mRNA downstream 4276 525556 ~ 532353 (-) True CI01000186_00525649_00532282
CI01000186_00485805_00522951.mRNA mRNA downstream 12862 485805 ~ 523767 (-) False CI01000186_00485805_00522951
CI01000186_00453106_00464818.mRNA mRNA downstream 71811 452092 ~ 464818 (-) True CI01000186_00453106_00464818
CI01000186_00433415_00435816.mRNA mRNA downstream 100635 432833 ~ 435994 (-) True CI01000186_00433415_00435816
CI01000186_00408656_00408943.mRNA mRNA downstream 127686 408135 ~ 408943 (-) True CI01000186_00408656_00408943
CI01000186_00588218_00590230.mRNA mRNA upstream 51268 588218 ~ 590804 (-) True CI01000186_00588218_00590230
CI01000186_00640328_00644798.mRNA mRNA upstream 102222 639172 ~ 648186 (-) True CI01000186_00640328_00644798
CI01000186_00656484_00658437.mRNA mRNA upstream 119343 656293 ~ 658614 (-) True CI01000186_00656484_00658437
CI01000186_00723511_00725818.mRNA mRNA upstream 186376 723326 ~ 725921 (-) False CI01000186_00723511_00725818
CI01000186_00749734_00761177.mRNA mRNA upstream 212593 749543 ~ 761177 (-) False CI01000186_00749734_00761177
TU432574 other downstream 48146 488357 ~ 488483 (-) True G378414
TU432687 other downstream 139874 396258 ~ 396755 (-) True G378509
TU432596 other downstream 169638 360910 ~ 366991 (-) True CI01000186_00360860_00361637
TU432581 other downstream 288545 245373 ~ 248084 (-) True CI01000186_00240507_00248051
TU432571 other downstream 312865 217476 ~ 217536 (-) True G378411

Expression Profile