RNA id: TU432773


Basic Information

Item Value
RNA id TU432773
length 429
lncRNA type antisense_over
GC content 0.52
exon number 1
gene id G378590
representative True

Chromosome Information

Item Value
chromosome id CI01000186
NCBI id null
chromosome length 966831
location 584851 ~ 585279 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTTGATCATAAAGGGGCAGACTGACCTCGGTGGAGTTCTCGTCTCCATTCTTGGAGAAGATGAACGCTGGGATGGCGTAGATCAGATTGAGGCTCCAGATGAGGCCGAAGCCGAGGATGAGGGATCTGGGGGGCCCGCGGGGGCCGTGCAGGCTGATGACGGGCGGGGCGACCCGACGCAGCGTTTGAAAGTGGAACGCACTCAGAAAGAACGTCGACCAAACGTTTGCGGAGCGGAGCCAAACCCAGATGCCCATCATAAGGTGACACATGTCTCTAGAGAGGAAAATCTGTGGGGAAACAGACACGTTGATGTTTGAAAATTGGTACAGAGCATAAAACAGTCGTCATTAGCAGTTTTGAGAGTGAATACAGTTCACGCAGTTGTCCTATCAAAGGAAACCCAGGTGCAGAGAATCCTAGTGTAAGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU432774 lncRNA downstream 1482 583153 ~ 583369 (-) True G378591
TU432719 lncRNA downstream 47901 536629 ~ 536950 (-) True G378541
TU432718 lncRNA downstream 48344 536193 ~ 536507 (-) True G378540
TU432717 lncRNA downstream 48943 535706 ~ 535908 (-) True G378539
TU432700 lncRNA downstream 133433 451036 ~ 451418 (-) True G378522
TU432775 lncRNA upstream 566 585845 ~ 586096 (-) True G378592
TU432744 lncRNA upstream 52370 637649 ~ 639093 (-) True G378564
TU432740 lncRNA upstream 68524 653803 ~ 654892 (-) True G378560
TU432732 lncRNA upstream 81767 667046 ~ 671996 (-) True G378552
TU432786 lncRNA upstream 87130 672409 ~ 672749 (-) True G378600
CI01000186_00525649_00532282.mRNA mRNA downstream 52498 525556 ~ 532353 (-) True CI01000186_00525649_00532282
CI01000186_00485805_00522951.mRNA mRNA downstream 61084 485805 ~ 523767 (-) False CI01000186_00485805_00522951
CI01000186_00453106_00464818.mRNA mRNA downstream 120033 452092 ~ 464818 (-) True CI01000186_00453106_00464818
CI01000186_00433415_00435816.mRNA mRNA downstream 148857 432833 ~ 435994 (-) True CI01000186_00433415_00435816
CI01000186_00408656_00408943.mRNA mRNA downstream 175908 408135 ~ 408943 (-) True CI01000186_00408656_00408943
CI01000186_00588218_00590230.mRNA mRNA upstream 2939 588218 ~ 590804 (-) True CI01000186_00588218_00590230
CI01000186_00640328_00644798.mRNA mRNA upstream 53893 639172 ~ 648186 (-) True CI01000186_00640328_00644798
CI01000186_00656484_00658437.mRNA mRNA upstream 71014 656293 ~ 658614 (-) True CI01000186_00656484_00658437
CI01000186_00723511_00725818.mRNA mRNA upstream 138047 723326 ~ 725921 (-) False CI01000186_00723511_00725818
CI01000186_00749734_00761177.mRNA mRNA upstream 164264 749543 ~ 761177 (-) False CI01000186_00749734_00761177
TU432574 other downstream 96368 488357 ~ 488483 (-) True G378414
TU432687 other downstream 188096 396258 ~ 396755 (-) True G378509
TU432596 other downstream 217860 360910 ~ 366991 (-) True CI01000186_00360860_00361637
TU432581 other downstream 336767 245373 ~ 248084 (-) True CI01000186_00240507_00248051
TU432571 other downstream 361087 217476 ~ 217536 (-) True G378411

Expression Profile