RNA id: TU432732


Basic Information

Item Value
RNA id TU432732
length 1550
lncRNA type inter_gene
GC content 0.47
exon number 2
gene id G378552
representative True

Chromosome Information

Item Value
chromosome id CI01000186
NCBI id null
chromosome length 966831
location 667046 ~ 671996 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATATTGTTAGTCAAGTTTATGCATTTGCAGATACATTTCACCAAAACGTCTTACATTACATTCAAGGTAAACATTTCTGAATCAGTTCGTGTTGATTGAGTCAACAAGCAGACAAAAAACATGGTTCAACTCAAACTCGAACAGACGTAAGAAATGAAAGTTGCTTTACTGTCAGACATAAAAACAGTTTCCATCTGATTTCATGAAGTTGTTTCCAGTCTCTGTGATCACTGACAGTGAAGTAAACATCAGCCACCGACACAAACACAGACGCGAGTTACAGCGGTTTTAATCATTCCTTCTACTAACACATGATCGTGACTCTAAACGAGCGTTAAACTGGAGTCCCGTCAGGTTTGCTCTGTTCTGACGTCTTCCTGCTGTCCTCCGGGACTTCCTGCAGAGGGCTGAGCACTTCCTGTGCCTTCAGCGGCGGCGTGAAGCCCGTCTTCGTGCCTTTAGCGGGTGTTTCTGGTGCCGGTCGGCCCTCGTTGTCCAGAACTCCTTCTCCATGAAGCCAGTCCATCTTCTGCCGGTGCTGCCGGATGGCCTCGTCCACACGGGCGTCGATCATGGCCTCAGTCAGGACCCCGTCCTCGGATGCGTACGCCGCCGCCTGACACACACACACACACACACACACACACTATCCATGAGCCTCTGCAGGACATCAGTTTTAATTCTACTTAGCCAATGAATTAATGTTTGTCATTTCTGAGGTTTAGCATGTTTAGTGTTGCTGAACGAGGAACAGACCTGCCATGCGACTCCGAGTTTAGAGATTTCTCGTCCAGACATGCCGTCCACACGCTTCGCAATCTCCGAACACTTCAGCCCATAATCGAACGGAGCCAGCTTCAGCCGCCTGCACACAATCAATCAATCAATCAATATCCAAATGACCTCATTTCATCGAGCATTTATAATCCAATTGTGTAAAAATGTCTGAATCAGTGTTAGTGTTAACTAAAACTAGAGCTGTAAAAATGTACTTTAATTGAAATAAAGCTGAAATACAACATTAATTAAAGTGTGTAGTGTGTGTATGAGAGAGTGTGTGTTCAGTGTGAGTGTGTTCAGTGTCTGTGTGTGTGAGTGTTCAGTGTGTGTTCAGTGTGAGTGTGTGTTCAGTGTGTTCAGTGTGTGTGTTCAGTGTGAGTTCAGTTTGAGTGTGTTCAGTGTGGGTGAGTTCAGTGTGTNNNNNNNNNNNNNGTTCAGTGTGAGTGTGTTCAGTGTGTGTGTGTTCAGTGTGTGTCTCACTGGCGTCCTCCAGTGGCCGGCTCCAGCACGTATCGGTCGAAGTACAGCCGCACGAGTCTCTCTCTCTCTTCGGGTCCCGGCAGCATGAAGTTCACGATCTCGTCGATTCGGTCGTTTATGGCCCAGTCAAACTGCTCAGGCTGATTACTGGCCAACACCAGCATAAACCTGCAACACACACACACACACACACACGATCAACACACCAGCGAGAGACAGACAGGTGTGTGTCAGACAGACAGACGGGTGCATTTACTTGTTGCTCTGTTCTCCGGTGCGGTACAGGAATG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU432740 lncRNA downstream 12154 653803 ~ 654892 (-) True G378560
TU432744 lncRNA downstream 27953 637649 ~ 639093 (-) True G378564
TU432775 lncRNA downstream 80950 585845 ~ 586096 (-) True G378592
TU432773 lncRNA downstream 81767 584851 ~ 585279 (-) True G378590
TU432774 lncRNA downstream 83677 583153 ~ 583369 (-) True G378591
TU432786 lncRNA upstream 413 672409 ~ 672749 (-) True G378600
TU432791 lncRNA upstream 30292 702288 ~ 703665 (-) True G378604
TU432797 lncRNA upstream 51149 723145 ~ 723375 (-) True CI01000186_00723511_00725818
TU432804 lncRNA upstream 55700 727696 ~ 727916 (-) True G378616
TU432828 lncRNA upstream 66344 738340 ~ 738623 (-) True G378622
CI01000186_00656484_00658437.mRNA mRNA downstream 8432 656293 ~ 658614 (-) True CI01000186_00656484_00658437
CI01000186_00640328_00644798.mRNA mRNA downstream 18860 639172 ~ 648186 (-) True CI01000186_00640328_00644798
CI01000186_00588218_00590230.mRNA mRNA downstream 76242 588218 ~ 590804 (-) True CI01000186_00588218_00590230
CI01000186_00525649_00532282.mRNA mRNA downstream 134693 525556 ~ 532353 (-) True CI01000186_00525649_00532282
CI01000186_00485805_00522951.mRNA mRNA downstream 143279 485805 ~ 523767 (-) False CI01000186_00485805_00522951
CI01000186_00723511_00725818.mRNA mRNA upstream 51330 723326 ~ 725921 (-) False CI01000186_00723511_00725818
CI01000186_00749734_00761177.mRNA mRNA upstream 77547 749543 ~ 761177 (-) False CI01000186_00749734_00761177
CI01000186_00763236_00766749.mRNA mRNA upstream 91086 763082 ~ 766749 (-) True CI01000186_00763236_00766749
CI01000186_00768176_00773034.mRNA mRNA upstream 95685 767681 ~ 773102 (-) True CI01000186_00768176_00773034
CI01000186_00777653_00779924.mRNA mRNA upstream 104724 776720 ~ 782157 (-) True CI01000186_00777653_00779924
TU432574 other downstream 178563 488357 ~ 488483 (-) True G378414
TU432687 other downstream 270291 396258 ~ 396755 (-) True G378509
TU432596 other downstream 300055 360910 ~ 366991 (-) True CI01000186_00360860_00361637
TU432581 other downstream 418962 245373 ~ 248084 (-) True CI01000186_00240507_00248051
TU432571 other downstream 443282 217476 ~ 217536 (-) True G378411

Expression Profile