RNA id: TU432786


Basic Information

Item Value
RNA id TU432786
length 341
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G378600
representative True

Chromosome Information

Item Value
chromosome id CI01000186
NCBI id null
chromosome length 966831
location 672409 ~ 672749 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTTTGTTCTAAATGGACCTCACTCTTACCAAGCGTGCCGCACAAGTCCTGAAAAGTGAAGCAAAAGCGTCTCGATCGCCCCCAGGTGGTTGGTCCCAGTACAGGTCATAAACCCCGCCCTCTCCATGTAATTTAATCGGACGTGAGACAAACTAAACAATTAAATTAGTTCAAATAATTTTTTTCCAAAGATGGTTTCTGTCATTTAATGTAGTTTTTATCACGCTGATGTAAATTCAAGTGTTCATTTTTTAAAATAAGTTTGGTTTTAGTTAGTTATTTGATGCTATAAAAACAGGGATGTGACAACATGATTGACAGCTTCTCTGAGTGAAGTAGTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU432732 lncRNA downstream 413 667046 ~ 671996 (-) True G378552
TU432740 lncRNA downstream 17517 653803 ~ 654892 (-) True G378560
TU432744 lncRNA downstream 33316 637649 ~ 639093 (-) True G378564
TU432775 lncRNA downstream 86313 585845 ~ 586096 (-) True G378592
TU432773 lncRNA downstream 87130 584851 ~ 585279 (-) True G378590
TU432791 lncRNA upstream 29539 702288 ~ 703665 (-) True G378604
TU432797 lncRNA upstream 50396 723145 ~ 723375 (-) True CI01000186_00723511_00725818
TU432804 lncRNA upstream 54947 727696 ~ 727916 (-) True G378616
TU432828 lncRNA upstream 65591 738340 ~ 738623 (-) True G378622
TU432829 lncRNA upstream 69039 741788 ~ 742067 (-) True G378623
CI01000186_00656484_00658437.mRNA mRNA downstream 13795 656293 ~ 658614 (-) True CI01000186_00656484_00658437
CI01000186_00640328_00644798.mRNA mRNA downstream 24223 639172 ~ 648186 (-) True CI01000186_00640328_00644798
CI01000186_00588218_00590230.mRNA mRNA downstream 81605 588218 ~ 590804 (-) True CI01000186_00588218_00590230
CI01000186_00525649_00532282.mRNA mRNA downstream 140056 525556 ~ 532353 (-) True CI01000186_00525649_00532282
CI01000186_00485805_00522951.mRNA mRNA downstream 148642 485805 ~ 523767 (-) False CI01000186_00485805_00522951
CI01000186_00723511_00725818.mRNA mRNA upstream 50577 723326 ~ 725921 (-) False CI01000186_00723511_00725818
CI01000186_00749734_00761177.mRNA mRNA upstream 76794 749543 ~ 761177 (-) False CI01000186_00749734_00761177
CI01000186_00763236_00766749.mRNA mRNA upstream 90333 763082 ~ 766749 (-) True CI01000186_00763236_00766749
CI01000186_00768176_00773034.mRNA mRNA upstream 94932 767681 ~ 773102 (-) True CI01000186_00768176_00773034
CI01000186_00777653_00779924.mRNA mRNA upstream 103971 776720 ~ 782157 (-) True CI01000186_00777653_00779924
TU432574 other downstream 183926 488357 ~ 488483 (-) True G378414
TU432687 other downstream 275654 396258 ~ 396755 (-) True G378509
TU432596 other downstream 305418 360910 ~ 366991 (-) True CI01000186_00360860_00361637
TU432581 other downstream 424325 245373 ~ 248084 (-) True CI01000186_00240507_00248051
TU432571 other downstream 448645 217476 ~ 217536 (-) True G378411

Expression Profile