RNA id: TU432500


Basic Information

Item Value
RNA id TU432500
length 221
lncRNA type antisense_over
GC content 0.39
exon number 1
gene id G378351
representative True

Chromosome Information

Item Value
chromosome id CI01000186
NCBI id null
chromosome length 966831
location 753509 ~ 753729 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GAAAATTTACATTTAGAAAACGTACAGACAGATTCATTGAAGTTATTACAGAGAGGAAATAACAAATTCAGAGAAAGAGAGGTTGTTTTGCAATCTGAGATCAGATGACTTTAAGAAAACTGCCCCGCTGCCACAGTCCACCATTGTTTGATCAGCTGCAGGTGAAGAAGCAGCAAGGTAGCCAAGTTAATGTCCTTACCTTGGATGATGTTTGATCTTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU432499 lncRNA upstream 1084 752129 ~ 752425 (+) True G378350
TU432453 lncRNA upstream 103355 649812 ~ 650154 (+) True G378327
TU432451 lncRNA upstream 115960 637018 ~ 637549 (+) True G378325
TU432446 lncRNA upstream 184682 568776 ~ 568827 (+) True G378323
TU432444 lncRNA upstream 187168 565996 ~ 566341 (+) True G378322
TU432501 lncRNA downstream 263 753992 ~ 754221 (+) True G378352
TU432410 lncRNA downstream 1631 755360 ~ 799355 (+) True G378290
TU432488 lncRNA downstream 73777 827506 ~ 853304 (+) True G378341
TU432483 lncRNA downstream 81384 835113 ~ 844630 (+) False G378340
TU432492 lncRNA downstream 127797 881526 ~ 896717 (+) False G378343
CI01000186_00697638_00721963.mRNA mRNA upstream 31546 697583 ~ 721963 (+) True CI01000186_00697638_00721963
CI01000186_00692336_00696891.mRNA mRNA upstream 56223 692258 ~ 697286 (+) True CI01000186_00692336_00696891
CI01000186_00676085_00686938.mRNA mRNA upstream 65859 675557 ~ 687650 (+) True CI01000186_00676085_00686938
CI01000186_00661361_00666431.mRNA mRNA upstream 87049 661032 ~ 666460 (+) True CI01000186_00661361_00666431
CI01000186_00659009_00660385.mRNA mRNA upstream 93065 658706 ~ 660444 (+) True CI01000186_00659009_00660385
CI01000186_00773514_00774851.mRNA mRNA downstream 19593 773322 ~ 774962 (+) True CI01000186_00773514_00774851
CI01000186_00796544_00798374.mRNA mRNA downstream 42815 796544 ~ 798809 (+) True CI01000186_00796544_00798374
CI01000186_00941016_00950379.mRNA mRNA downstream 185810 939539 ~ 950529 (+) False CI01000186_00941016_00950379
TU432363 other upstream 337186 411820 ~ 414878 (+) False G378256
TU432362 other upstream 337208 411820 ~ 411920 (+) False G378256
TU432364 other upstream 337208 411820 ~ 414878 (+) False G378256
TU432365 other upstream 337208 411820 ~ 411920 (+) True G378256
TU432150 other upstream 740014 11415 ~ 13495 (+) False G378108
TU432491 other downstream 140779 894508 ~ 896717 (+) True G378343

Expression Profile