RNA id: TU432840


Basic Information

Item Value
RNA id TU432840
length 230
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G378634
representative True

Chromosome Information

Item Value
chromosome id CI01000186
NCBI id null
chromosome length 966831
location 808171 ~ 808400 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTTAGAAAAGAAACGCTCCATGATGTACACCGATCAGGAATAACATGAGCACTGACAGGTGAATAACACTGATTCTCTCTTCATCACGGCACCTGTTAGTGGGTGGATATATTAGGCAGCAAGTGAACATTTTGTCCTCAAAGTCGATGTGTTAGAAGCAGGAAAAATGGGCAAGTGTAAGGATTTGAGTGAGTTTGACAAGGACCAAATTGTGATGGCTAGACGACTGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU432725 lncRNA downstream 5858 801075 ~ 802313 (-) True G378546
TU432726 lncRNA downstream 5858 800682 ~ 802313 (-) True G378546
TU432837 lncRNA downstream 47957 759893 ~ 760214 (-) True G378631
TU432835 lncRNA downstream 56758 751210 ~ 751413 (-) True CI01000186_00749734_00761177
TU432829 lncRNA downstream 66104 741788 ~ 742067 (-) True G378623
TU432878 lncRNA upstream 133889 942289 ~ 946294 (-) True G378670
CI01000186_00804745_00805695.mRNA mRNA downstream 2418 804644 ~ 805753 (-) True CI01000186_00804745_00805695
CI01000186_00799178_00799351.mRNA mRNA downstream 8820 798945 ~ 799351 (-) False CI01000186_00799178_00799351
CI01000186_00777653_00779924.mRNA mRNA downstream 26014 776720 ~ 782157 (-) True CI01000186_00777653_00779924
CI01000186_00768176_00773034.mRNA mRNA downstream 35069 767681 ~ 773102 (-) True CI01000186_00768176_00773034
CI01000186_00763236_00766749.mRNA mRNA downstream 41422 763082 ~ 766749 (-) True CI01000186_00763236_00766749
CI01000186_00815815_00829935.mRNA mRNA upstream 7332 815732 ~ 831302 (-) True CI01000186_00815815_00829935
CI01000186_00842940_00858572.mRNA mRNA upstream 33877 842277 ~ 858696 (-) True CI01000186_00842940_00858572
CI01000186_00873286_00934953.mRNA mRNA upstream 64731 873131 ~ 934953 (-) True CI01000186_00873286_00934953
CI01000186_00956103_00957823.mRNA mRNA upstream 147703 956103 ~ 957823 (-) True CI01000186_00956103_00957823
TU432574 other downstream 319688 488357 ~ 488483 (-) True G378414
TU432687 other downstream 411416 396258 ~ 396755 (-) True G378509
TU432596 other downstream 441180 360910 ~ 366991 (-) True CI01000186_00360860_00361637
TU432581 other downstream 560087 245373 ~ 248084 (-) True CI01000186_00240507_00248051
TU432571 other downstream 584407 217476 ~ 217536 (-) True G378411

Expression Profile