RNA id: TCONS_00018580


Basic Information

Item Value
RNA id TCONS_00018580
length 632
RNA type mRNA
GC content 0.44
exon number 3
gene id XLOC_009460
representative True

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 39847491 ~ 39848822 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGAGTTTGTTGTTGACAACAACCGGTAGCGCTACGACTTTTTCAAGGCGTTCAGATTTGCGTGCACTATTCCACGTCGTATCCGTATAAACTCGTGAAAGAGAAAGCGAGAAATCTCCTACTGCTTCTGTCCACATTCTGAAGTGTTCATCAGATGGGTCCATCTATCACAGGAGGCCACGAAAAACCATGCGGCAAGATGATGATGCTACGTCACAATGTGGAAAACTGGATAGATTTATACATCTTACATGTAAGACTTGCAAGGCAAGAAAACAGAGAAAACCTGAATTCAAAACATGAAACTGGTGTGTgcagtgatgatgatgaagaacagcagtgtgctgatgaagtaaatgtTGAAGATGCTGTAGTGCCATGGACAAGACCCTGCATCCCTCCACCTGCCTGCGTGTCCTCATCTGAGCCAGATGCTGGTGTGGTCTCTTCATCTTCAGTATGAATCGGTTTCTCAGGCATGGACAGCCTCACCTCACAACTCTGTTCCAGTCTGACTGCAGCACTGAGGGATGTGATGGCAAAAACAAGTGAAGTCCAGCATGCAGCAGAACATGGGGTTTTGTCTGAAATACATGATTGTTTGAATAAGTTTGAATAAAGCTTAGTTTCGTA

Function

GO:

id name namespace
GO:0061386 closure of optic fissure biological_process
GO:0009259 ribonucleotide metabolic process biological_process
GO:0009260 ribonucleotide biosynthetic process biological_process
GO:1902600 proton transmembrane transport biological_process
GO:0018130 heterocycle biosynthetic process biological_process
GO:0046034 ATP metabolic process biological_process
GO:1901293 nucleoside phosphate biosynthetic process biological_process
GO:0006119 oxidative phosphorylation biological_process
GO:0006163 purine nucleotide metabolic process biological_process
GO:0006164 purine nucleotide biosynthetic process biological_process
GO:0017144 drug metabolic process biological_process
GO:1901362 organic cyclic compound biosynthetic process biological_process
GO:0009117 nucleotide metabolic process biological_process
GO:0009123 nucleoside monophosphate metabolic process biological_process
GO:0009124 nucleoside monophosphate biosynthetic process biological_process
GO:0009126 purine nucleoside monophosphate metabolic process biological_process
GO:0009127 purine nucleoside monophosphate biosynthetic process biological_process
GO:0046390 ribose phosphate biosynthetic process biological_process
GO:0055086 nucleobase-containing small molecule metabolic process biological_process
GO:0048880 sensory system development biological_process
GO:0006753 nucleoside phosphate metabolic process biological_process
GO:0006754 ATP biosynthetic process biological_process
GO:0009141 nucleoside triphosphate metabolic process biological_process
GO:0009142 nucleoside triphosphate biosynthetic process biological_process
GO:0009144 purine nucleoside triphosphate metabolic process biological_process
GO:0009145 purine nucleoside triphosphate biosynthetic process biological_process
GO:0009150 purine ribonucleotide metabolic process biological_process
GO:0009152 purine ribonucleotide biosynthetic process biological_process
GO:0009156 ribonucleoside monophosphate biosynthetic process biological_process
GO:0072521 purine-containing compound metabolic process biological_process
GO:0072522 purine-containing compound biosynthetic process biological_process
GO:0009161 ribonucleoside monophosphate metabolic process biological_process
GO:0009165 nucleotide biosynthetic process biological_process
GO:0009167 purine ribonucleoside monophosphate metabolic process biological_process
GO:0009168 purine ribonucleoside monophosphate biosynthetic process biological_process
GO:0007399 nervous system development biological_process
GO:0015985 energy coupled proton transport, down electrochemical gradient biological_process
GO:0019693 ribose phosphate metabolic process biological_process
GO:0015986 ATP synthesis coupled proton transport biological_process
GO:0001654 eye development biological_process
GO:0009199 ribonucleoside triphosphate metabolic process biological_process
GO:0019438 aromatic compound biosynthetic process biological_process
GO:0009201 ribonucleoside triphosphate biosynthetic process biological_process
GO:0009205 purine ribonucleoside triphosphate metabolic process biological_process
GO:0009206 purine ribonucleoside triphosphate biosynthetic process biological_process
GO:0007423 sensory organ development biological_process
GO:0034654 nucleobase-containing compound biosynthetic process biological_process
GO:0150063 visual system development biological_process
GO:0005743 mitochondrial inner membrane cellular_component
GO:0005753 mitochondrial proton-transporting ATP synthase complex cellular_component
GO:0044429 obsolete mitochondrial part cellular_component
GO:0016469 proton-transporting two-sector ATPase complex cellular_component
GO:0044455 obsolete mitochondrial membrane part cellular_component
GO:0033177 proton-transporting two-sector ATPase complex, proton-transporting domain cellular_component
GO:0019866 organelle inner membrane cellular_component
GO:0045259 proton-transporting ATP synthase complex cellular_component
GO:0045263 proton-transporting ATP synthase complex, coupling factor F(o) cellular_component
GO:0031966 mitochondrial membrane cellular_component
GO:0031967 organelle envelope cellular_component
GO:0031975 envelope cellular_component
GO:0000276 mitochondrial proton-transporting ATP synthase complex, coupling factor F(o) cellular_component
GO:0098796 membrane protein complex cellular_component
GO:0098798 mitochondrial protein-containing complex cellular_component
GO:0098800 inner mitochondrial membrane protein complex cellular_component
GO:0005740 mitochondrial envelope cellular_component
GO:0044769 ATPase activity, coupled to transmembrane movement of ions, rotational mechanism molecular_function
GO:0046933 proton-transporting ATP synthase activity, rotational mechanism molecular_function
GO:0015077 monovalent inorganic cation transmembrane transporter activity molecular_function
GO:0015078 proton transmembrane transporter activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDART00000155230

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00019222 lncRNA downstream 27083 39763470 ~ 39820412 (-) False XLOC_009459
TCONS_00018568 lncRNA downstream 895066 38948423 ~ 38952429 (-) False XLOC_009458
TCONS_00018571 lncRNA downstream 895073 38948423 ~ 38952422 (-) False XLOC_009458
TCONS_00018569 lncRNA downstream 895411 38948423 ~ 38952084 (-) False XLOC_009458
TCONS_00018570 lncRNA downstream 895441 38948423 ~ 38952054 (-) False XLOC_009458
TCONS_00019224 lncRNA upstream 154042 40002864 ~ 40006262 (-) False XLOC_009464
TCONS_00019226 lncRNA upstream 154042 40002864 ~ 40006263 (-) False XLOC_009464
TCONS_00019225 lncRNA upstream 154042 40002864 ~ 40006263 (-) False XLOC_009464
TCONS_00019227 lncRNA upstream 154042 40002864 ~ 40006264 (-) False XLOC_009464
TCONS_00019228 lncRNA upstream 154042 40002864 ~ 40006538 (-) True XLOC_009464
TCONS_00018576 mRNA downstream 27004 39277099 ~ 39820491 (-) False XLOC_009459
TCONS_00018577 mRNA downstream 27618 39629830 ~ 39819877 (-) False XLOC_009459
TCONS_00018578 mRNA downstream 27618 39763650 ~ 39819877 (-) True XLOC_009459
TCONS_00018567 mRNA downstream 1485708 38339386 ~ 38361787 (-) True XLOC_009454
TCONS_00018565 mRNA downstream 1629175 38201964 ~ 38218320 (-) False XLOC_009452
TCONS_00018581 mRNA upstream 85473 39934295 ~ 39945036 (-) False XLOC_009461
TCONS_00018582 mRNA upstream 85473 39934295 ~ 39948635 (-) False XLOC_009461
TCONS_00018583 mRNA upstream 86930 39935752 ~ 39955785 (-) True XLOC_009461
TCONS_00018584 mRNA upstream 108987 39957809 ~ 39963009 (-) True XLOC_009462
TCONS_00018585 mRNA upstream 116121 39964943 ~ 39971756 (-) False XLOC_009463
TCONS_00018535 other downstream 2118329 37727834 ~ 37729166 (-) True XLOC_009432
TCONS_00018517 other downstream 2973129 36874251 ~ 36874366 (-) True XLOC_009420
TCONS_00018513 other downstream 3314248 36529465 ~ 36533247 (-) True XLOC_009417
TCONS_00018488 other downstream 4635258 35167295 ~ 35212237 (-) True XLOC_009400
TCONS_00018481 other downstream 4734709 35095205 ~ 35112786 (-) False XLOC_009398
TCONS_00018590 other upstream 220189 40069011 ~ 40069127 (-) True XLOC_009467
TCONS_00018622 other upstream 1544579 41393401 ~ 41396073 (-) True XLOC_009478
TCONS_00018633 other upstream 1680438 41529260 ~ 41543440 (-) True XLOC_009482
TCONS_00018660 other upstream 2428851 42277673 ~ 42283815 (-) True XLOC_009502
TCONS_00018661 other upstream 2679968 42528790 ~ 42528904 (-) True XLOC_009503

Expression Profile

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