RNA id: TCONS_00019228


Basic Information

Item Value
RNA id TCONS_00019228
length 3357
lncRNA type antisense_over
GC content 0.34
exon number 2
gene id XLOC_009464
representative True

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 40002864 ~ 40006538 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ctatctatctatccatccatccatccatccatccatccatccatccatccatccatccatccatccatccatccatccatccatccatccatccatccatccatccatccatccatccatccatctatccatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatctatccatttaacACTATCCATCTTTAGTGATTAACACTACAGTTACCCAAACAAAGACAGTAGAAACAAGTATTTTTATTCCAAACTTTATTTCCAACTGTTAGTCTGTCTACAAACTGACATTTCAGATGAAACTCCATCATTTCTGCGCCCAAGTGTTATTACTCAGGCCAGCTCTACATAGGTTAAATTGgaccatttaattgaaacagaCAGCAGGCCAAGAGGTTTCCAGCCGGTCCGTTAAAGACGTCCATGCTTAATCTAAAGGCTGCGAAATACAAACATGCACTGATATGCAAGATAGGTTTACTAATTCTCAGAATTCTTAATGCTCGGCCAGTTACCATGTCAGGCATACAagatgactgtgattggctgctgtTACAAGTGCCAACCAATGAAAGAGTCTAGTCTGTTGTAAAATCGCAGCTTATGGTGAGTTGCCCGTCACCATATAAACAGGATAAGCAGAGACTCAAATATGAGGAAAACTGTTTAAGCTACGCAGTTTCATTGCATtcatcactaaaataaaatactgttataGACATATATTAATCCCTGTATTTCTGACCAGAACTGTAAACATTCTGCAGAACATCTATGAGTAAAGTTCTGCATTAAAAGTAACATTATGCATTCAAAATGAAGGGGTTTATGGCAGACGATTGTGGCTGGCTGGTGAGTAAAAGCAGTCATAACCTGAAAATGATCAACCAAAACCCTGCACTTTcaattttaggtgttttttttagaCGTGGGGTAAGCTtagattaaaaagaaaaaccCCTGGAGCAAGTACCAGATGCTATAAAACAAacctaaaaaaaacattcacagagTGTGAGTGAGCTTGAGCCGCTCGTCTACATCCAACCGTTTCAGATTCAACTCCAGCTATAGTAACATCTCACAATGGATTAGTTAATTTTATCCCCAAAATAAAAGGTACAGTAAGAAAGATGATACAGTAAGTGGGCTGGTATATTAAGTAAAATCACACAAAACCAGTAAAGAACACCTCACCTCCAAATTCAAGAGAAAGAATATCGTTAAATGTTTGTACAATCTCTTTGTGCaaacattttgatttaaatatgattgcattgtaattattttagaAAAAGTGATCAtcaaaaaaatcatcatttattgtaactcatgtggttttaaacctcaATGGGTCTGTTtgtttcttttgaacacaaaagaagatattttgaagaatgctagttgCTGACATCCATTTATGGACTTCCGTACTTGGAATCAATGGGTAccagcaaccaacattcttcaaaatatcttcctttgcgtgtcaacagaataataaaaaaatccaaattgGTTCTGAACaacagtgagtaaatgattactattgcattgtaattaataataataacaataagcttaaagggatagttcatccaaaaaatgaaaattacctcatcatttattgtCACTCATGTGGTTGagcttttatgagtttctttgttctgttgaacacaaaggaagatatattgCATAATGCTGGTTGCTCACACCCTTTTATTGACTTCCTTTCCTGGAATCAATGGGTAccagcaaccaacattcttcaaattatcttcctTTGCGGTCAACAGATTGatataaaaaaatccaaatagATTCTTAACAACAGCGAGTAAATGATTATAACTGcattgtaattaataaaaaatatcaataataatagtaataataagcttaaagggatggttaactccaaaaaaaaaaaaaagaagaaaatcatTTATTGTCactcgtgtggttttaaacctttgagtttttttcttctgttaaagatattttgcagaatgcTAGTTGCTCACACCCTTTTATTGACTTCCATACCTGGAATCAATGGGTACCAAcagcaacattcttcaaaatatcttcctttgtgttcaacagaaagataAAAAATCCAAACAGTTTTTGAACAACGGTGAGTAAACGAATACAACtgcattataattaataaataagcttaaagggatagttaacacaaaaaatttaaatgaccATTACTTATTgtcagcacaaaagaagatattttgaagaatgctgaatgcTTACACTCTTTTATTGACTTCCATATCTGGAATCAATGGGTACCagaaccaacattcttcaaaataccttcattAGCTtttcaatacaataaaataaaaattcaaataggttttgaagaaTGGTGAGTGAATTGCAttgtaatcatatatatatatatatatatatatatccttaaagggatagttcacacaaaaaaaagaagaaaatgacctcatcatttattGTCACTAATGCAGTTTTAAacctttgactttcttttttttttaacataaaataagatattttgaagaattttggatGCTCACACCCttttattgacttccatacttGAAATCAATGGGTAccagcaaccaacattcttcaaaatatcttcttttgtgtttcaacagataaaaaaaaaaacgtaactaGGTTTTGAACCACGGcgaataaatgattcagttaattTCTTGGTGAACCATCCTTttattatctgaaaaacaattctGAAAAGCTAGTATAAAGATTTACTATAGAATCATGATTTAGTTCAAATCAATGTAAATTTTTGATGAGCAGGTCACAAAATATAACATTTCTCTTGATTATGGGGTGACGTGAGGTTTTGTCAGATTCTACTATGCATTCAGCAAATGATCAAAAGCTGACATTAAATGAGAATGTCTAAAAGGTTTGAGTACTAGACAAATACTACACCAGTGGGGTTAGTAACACCGAAAACTAGAATAGACAGATCATAAATTTTAGGGTTACAACCACAGAAAGCAGAATTAACAGCGCCAACTTTCCATTCCACCCATTCAATGCAGTGACTAATAATGATAAACAAAAATGCCAGCGTTAAATCAGAGACGGCGCTAACAAATCAGTATCTAACCTCTCACATTTACTCGTCCACACGTCTCTCGAAATGACTCTGACACAATAAACCGTTACCATGTCTAAGGTGCTAAAACACATCCTACAAAgccaaaacaaatatgaaaagtgaaaaaaaacaaaccctATGTACACGTTCACTACTCATCCAGGATATGCAACCTCGAAATGTG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00018579 lncRNA downstream 154084 39847495 ~ 39848780 (-) False XLOC_009460
TCONS_00019223 lncRNA downstream 154295 39847491 ~ 39848569 (-) False XLOC_009460
TCONS_00019222 lncRNA downstream 182452 39763470 ~ 39820412 (-) False XLOC_009459
TCONS_00018574 lncRNA downstream 1050810 38949834 ~ 38952054 (-) False XLOC_009458
TCONS_00018591 lncRNA upstream 118871 40125409 ~ 40129076 (-) False XLOC_009468
TCONS_00019229 lncRNA upstream 118871 40125409 ~ 40129541 (-) False XLOC_009468
TCONS_00018592 lncRNA upstream 122068 40128606 ~ 40129076 (-) False XLOC_009468
TCONS_00019230 lncRNA upstream 122068 40128606 ~ 40129541 (-) True XLOC_009468
TCONS_00018597 lncRNA upstream 153830 40160368 ~ 40160874 (-) False XLOC_009469
TCONS_00018585 mRNA downstream 31108 39964943 ~ 39971756 (-) False XLOC_009463
TCONS_00018586 mRNA downstream 32876 39964945 ~ 39969988 (-) True XLOC_009463
TCONS_00018584 mRNA downstream 39855 39957809 ~ 39963009 (-) True XLOC_009462
TCONS_00018583 mRNA downstream 47079 39935752 ~ 39955785 (-) True XLOC_009461
TCONS_00018582 mRNA downstream 54229 39934295 ~ 39948635 (-) False XLOC_009461
TCONS_00018587 mRNA upstream 33617 40040155 ~ 40041455 (-) True XLOC_009465
TCONS_00018588 mRNA upstream 44680 40051218 ~ 40065296 (-) False XLOC_009466
TCONS_00018589 mRNA upstream 44713 40051251 ~ 40065265 (-) True XLOC_009466
TCONS_00018593 mRNA upstream 131026 40137564 ~ 40175894 (-) False XLOC_009469
TCONS_00018594 mRNA upstream 144167 40150705 ~ 40157165 (-) False XLOC_009469
TCONS_00018535 other downstream 2273698 37727834 ~ 37729166 (-) True XLOC_009432
TCONS_00018517 other downstream 3128498 36874251 ~ 36874366 (-) True XLOC_009420
TCONS_00018513 other downstream 3469617 36529465 ~ 36533247 (-) True XLOC_009417
TCONS_00018488 other downstream 4790627 35167295 ~ 35212237 (-) True XLOC_009400
TCONS_00018481 other downstream 4890078 35095205 ~ 35112786 (-) False XLOC_009398
TCONS_00018590 other upstream 62473 40069011 ~ 40069127 (-) True XLOC_009467
TCONS_00018622 other upstream 1386863 41393401 ~ 41396073 (-) True XLOC_009478
TCONS_00018633 other upstream 1522722 41529260 ~ 41543440 (-) True XLOC_009482
TCONS_00018660 other upstream 2271135 42277673 ~ 42283815 (-) True XLOC_009502
TCONS_00018661 other upstream 2522252 42528790 ~ 42528904 (-) True XLOC_009503

Expression Profile

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