RNA id: TCONS_00018598


Basic Information

Item Value
RNA id TCONS_00018598
length 930
lncRNA type retained_intron
GC content 0.37
exon number 6
gene id XLOC_009469
representative True

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 40137564 ~ 40175894 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACAAGCCGTCGTTGATGTCGCCATTTTACACGTTTGTTCAGatatgatattttaaaaagatactAATTCTTTGTTGCAGTTGTGTACACGTAAAGGTATGTTCGACATTGTGAATTTGAACGGGATTTTTAACTTTCAGCGGATACATTTTCTACTGTAGAGTATGCCGGTACAGCGTAAGTTTTTCGATTCTCAGTTTCAACATCCACCTGCCCTACAGCAGGCAAATGGGCTAAATTGGGCTAAACAGAGTTACAGTCTGAGAACAAATGGGGAACCATCTCCAGGACCCACACTTCCTCAATCAAGTGTGCTGTATAATGGAGCAGGTGTTATGGGAGAAAATGAAAGACCAGATGAGGCACCTTCCCCTGCAGCTTCATACTGCTCTTTCAAAAGCAATCACTCAGTGGATTGCCTAACTACATTCAGTGACACAACCCAGATACATGGTGTTAAAAGaATGCAACAAGATGAGATGTTATTTACATTACCCTCAAACCTGACTATGGACTATGCTCAGTCAGTGGATCAGCAGACTATGTTGAACGATCCAACTCAACATGCCGTTGCAGATAATATTTTTTTAAAGTCACTTTCAGGAATGAGAGCCTATGTGAGAACTTCTCCAGCACCCTCATACATGTCTGCAAAAAGTGATCAGTCAATAGATCGGCCGATTGTGTTCACAAATGAAACCGACCATAACTACATGAAGTATGggaatttgttttttattgttagaATATATATGATgacttaatttgtaaaaacagaTAACTCAGTTTTAGTCATTACATAAATTATGTATGTTTGTGAGTATGAAGCATAAGTATGTCTTTAGCATTTTGTAAATATGCAGTATTTTGTAAGTATGCagcataaaaaatacatttatgacaATAAAAAGTTATCTGTTTTAGAGTTTTC

Function

GO:

id name namespace
GO:0046872 metal ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-131121-575 Predicted to enable metal ion binding activity.

Ensembl:

ensembl_id ENSDART00000155018

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00018597 lncRNA downstream 1432 40160368 ~ 40160874 (-) False XLOC_009469
TCONS_00019229 lncRNA downstream 32765 40125409 ~ 40129541 (-) False XLOC_009468
TCONS_00019230 lncRNA downstream 32765 40128606 ~ 40129541 (-) True XLOC_009468
TCONS_00018591 lncRNA downstream 33230 40125409 ~ 40129076 (-) False XLOC_009468
TCONS_00018592 lncRNA downstream 33230 40128606 ~ 40129076 (-) False XLOC_009468
TCONS_00019231 lncRNA upstream 72967 40248829 ~ 40260796 (-) True XLOC_009470
TCONS_00018601 lncRNA upstream 180517 40356379 ~ 40360420 (-) False XLOC_009471
TCONS_00018604 lncRNA upstream 180517 40356379 ~ 40360424 (-) False XLOC_009471
TCONS_00018603 lncRNA upstream 180517 40356379 ~ 40360584 (-) False XLOC_009471
TCONS_00018602 lncRNA upstream 181551 40357413 ~ 40360121 (-) False XLOC_009471
TCONS_00018596 mRNA downstream 4793 40154158 ~ 40157513 (-) False XLOC_009469
TCONS_00018595 mRNA downstream 4975 40154158 ~ 40157331 (-) False XLOC_009469
TCONS_00018594 mRNA downstream 5141 40150705 ~ 40157165 (-) False XLOC_009469
TCONS_00018588 mRNA downstream 97010 40051218 ~ 40065296 (-) False XLOC_009466
TCONS_00018589 mRNA downstream 97041 40051251 ~ 40065265 (-) True XLOC_009466
TCONS_00018599 mRNA upstream 41394 40217256 ~ 40267485 (-) False XLOC_009470
TCONS_00018600 mRNA upstream 44816 40220678 ~ 40246396 (-) False XLOC_009470
TCONS_00018607 mRNA upstream 993349 41169211 ~ 41234144 (-) False XLOC_009473
TCONS_00018608 mRNA upstream 996692 41172554 ~ 41235027 (-) False XLOC_009473
TCONS_00018609 mRNA upstream 1002781 41178643 ~ 41234139 (-) True XLOC_009473
TCONS_00018590 other downstream 93179 40069011 ~ 40069127 (-) True XLOC_009467
TCONS_00018535 other downstream 2433140 37727834 ~ 37729166 (-) True XLOC_009432
TCONS_00018517 other downstream 3287940 36874251 ~ 36874366 (-) True XLOC_009420
TCONS_00018513 other downstream 3629059 36529465 ~ 36533247 (-) True XLOC_009417
TCONS_00018488 other downstream 4950069 35167295 ~ 35212237 (-) True XLOC_009400
TCONS_00018622 other upstream 1217539 41393401 ~ 41396073 (-) True XLOC_009478
TCONS_00018633 other upstream 1353398 41529260 ~ 41543440 (-) True XLOC_009482
TCONS_00018660 other upstream 2101811 42277673 ~ 42283815 (-) True XLOC_009502
TCONS_00018661 other upstream 2352928 42528790 ~ 42528904 (-) True XLOC_009503
TCONS_00018665 other upstream 2552608 42728470 ~ 42728586 (-) True XLOC_009507

Expression Profile

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