RNA id: TCONS_00019231


Basic Information

Item Value
RNA id TCONS_00019231
length 486
lncRNA type sense_over
GC content 0.47
exon number 3
gene id XLOC_009470
representative True

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 40217256 ~ 40267485 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TAtatattcaacaacaacaacacatttttttgagtgtattctAACCTCAGATAATCAGCTCTGCATTACAGCTGATCCCATTCACCCAATGCACAGCTTCTTCAGTCTGCTACTGTCAGGGAGCCTCCAGGCCCGGACCAACAGACTGAAGGACAGCTTTATTCATCAGGCTGTCAGGAAGCTCAACTCTCTCCCGGCTCTCCCACCACTCCCTTCTCCCTCCCCACGCACCTTTgaactctgacacagatGTGAGTCAATTCATCATCAGAAAAAGTGTCAGTGGTCACTAAGGAGGCGGCGTTCCCATTTCGGTCCAATTGGGAATATCCTAACGTCTGGATTCCTATTAAAAGAACCTACTTTAGAGACCAGGCTCCTGCTTTGGCGGACAAAGTCCATCCAACCCAAACGATGCCAGAGACTCTTAATCATCAACACAGCTTCTGTGAAACATTTGTTGTGTGGAGGTAATAAGTGACAGTG

Function

GO:

id name namespace
GO:0097324 melanocyte migration biological_process
GO:0034765 regulation of ion transmembrane transport biological_process
GO:0051876 pigment granule dispersal biological_process
GO:0051877 pigment granule aggregation in cell center biological_process
GO:0043473 pigmentation biological_process
GO:0006811 ion transport biological_process
GO:0006813 potassium ion transport biological_process
GO:0030318 melanocyte differentiation biological_process
GO:1990573 potassium ion import across plasma membrane biological_process
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005242 inward rectifier potassium channel activity molecular_function
GO:0005244 voltage-gated ion channel activity molecular_function

KEGG:

id description
ko04974 Protein digestion and absorption
ko04040 Ion channels

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00018598 lncRNA downstream 72967 40162306 ~ 40175862 (-) True XLOC_009469
TCONS_00018597 lncRNA downstream 87955 40160368 ~ 40160874 (-) False XLOC_009469
TCONS_00019229 lncRNA downstream 119288 40125409 ~ 40129541 (-) False XLOC_009468
TCONS_00019230 lncRNA downstream 119288 40128606 ~ 40129541 (-) True XLOC_009468
TCONS_00018591 lncRNA downstream 119753 40125409 ~ 40129076 (-) False XLOC_009468
TCONS_00018601 lncRNA upstream 95583 40356379 ~ 40360420 (-) False XLOC_009471
TCONS_00018604 lncRNA upstream 95583 40356379 ~ 40360424 (-) False XLOC_009471
TCONS_00018603 lncRNA upstream 95583 40356379 ~ 40360584 (-) False XLOC_009471
TCONS_00018602 lncRNA upstream 96617 40357413 ~ 40360121 (-) False XLOC_009471
TCONS_00018605 lncRNA upstream 97536 40358332 ~ 40359218 (-) False XLOC_009471
TCONS_00018600 mRNA downstream 2433 40220678 ~ 40246396 (-) False XLOC_009470
TCONS_00018593 mRNA downstream 72935 40137564 ~ 40175894 (-) False XLOC_009469
TCONS_00018596 mRNA downstream 91316 40154158 ~ 40157513 (-) False XLOC_009469
TCONS_00018595 mRNA downstream 91498 40154158 ~ 40157331 (-) False XLOC_009469
TCONS_00018594 mRNA downstream 91664 40150705 ~ 40157165 (-) False XLOC_009469
TCONS_00018607 mRNA upstream 908415 41169211 ~ 41234144 (-) False XLOC_009473
TCONS_00018608 mRNA upstream 911758 41172554 ~ 41235027 (-) False XLOC_009473
TCONS_00018609 mRNA upstream 917847 41178643 ~ 41234139 (-) True XLOC_009473
TCONS_00018611 mRNA upstream 988976 41249772 ~ 41290415 (-) False XLOC_009475
TCONS_00018612 mRNA upstream 1027323 41288119 ~ 41310340 (-) False XLOC_009475
TCONS_00018590 other downstream 179702 40069011 ~ 40069127 (-) True XLOC_009467
TCONS_00018535 other downstream 2519663 37727834 ~ 37729166 (-) True XLOC_009432
TCONS_00018517 other downstream 3374463 36874251 ~ 36874366 (-) True XLOC_009420
TCONS_00018513 other downstream 3715582 36529465 ~ 36533247 (-) True XLOC_009417
TCONS_00018488 other downstream 5036592 35167295 ~ 35212237 (-) True XLOC_009400
TCONS_00018622 other upstream 1132605 41393401 ~ 41396073 (-) True XLOC_009478
TCONS_00018633 other upstream 1268464 41529260 ~ 41543440 (-) True XLOC_009482
TCONS_00018660 other upstream 2016877 42277673 ~ 42283815 (-) True XLOC_009502
TCONS_00018661 other upstream 2267994 42528790 ~ 42528904 (-) True XLOC_009503
TCONS_00018665 other upstream 2467674 42728470 ~ 42728586 (-) True XLOC_009507

Expression Profile

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