RNA id: TCONS_00019233


Basic Information

Item Value
RNA id TCONS_00019233
length 2361
lncRNA type inter_gene
GC content 0.35
exon number 2
gene id XLOC_009472
representative True

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 41068774 ~ 41072197 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

aatgtctagacaGCGATTAAGGACAaggttattttgatgtccaataacaacgtcaaattcTGTTGatatttgcttaattttagattgtgttagaaagtgacaaaaatacaacgtctgatagatgtcagagtggtaatgtccacacagcgTCAATGTGTTACATAATTAGACGCTGATATTTGGATGATTTTAGGTTGAATATTGAACATTGACATTGgcttctgacgtcaacctgattttcatttccaaacaaaatccaatgtccccTCGATATTAGGgtatgttggggtacaatgtcaatatgcGTCATGTTGaaatcctgtgcctgcagggatgtTGTTCATAATTCCAgctgaattggtcacatgacttCATGACCATTCACAGAATGTGTTTTTCCATTCCAATGTGCTACTTATCcaatgtttttctaaaataaaacacacaacaaataagataaaaacaaatagtTGAGAGCTGAGAAAACAGCAATTCACAGGCCTCAACTAAAAATGGAAATGTTATGATAATTTAACCATAAAGTATATTAGACACTATAGATTTATATAGATTTGGCTATGCGAGGGTATCATTTTAATTGATCCATTACTTTGGATGTCACTTTGACATTAAAGCATTGCCTGTTCAGCACTATTCTGACCATTATAAGCATTGGCATAAGAATCTATCAACAGACTTTAATAGACAACCTCTGAAGTCAGAAAAACTCTTGTTTTTATAACTTTTGCTTATTACTGGTTTCgtgatgccaaaaaaaaaaagcaattaacaCGTTAACATTTGTACATATAGCCCCTTTAAATATAGGTTAAAATTTCATTACAGACCTGCTAAGTGTGCCATGGTCCAGCATATtatataaaatgcaattaaatgtaATTTCTCACAATATTTAATGATTAAACTATACTTAAGATGTCATAAGTGCATTGATGTCTTTCATAAAGCATTATTACTAAGCGCAATCAGAACCGAAGTTCCTTTAGTGAACGTTTATAGGCCTTCAAAATAAATCACTAAAACCTTAGTGCTTCGTGTATTAATAATTTGGAGTACTTAATATTTGAGGCTTAAATCTGACCCTGAACGGGAAGATCCACTGATTACTGTGAATAGGGTAAACCAATGTCTATGACTCAGTGGGGAAATCACTAGGCATGAATTGTGCTAATAGCTGATAGTTTAATTGCGTATTTTCTAGCACCTGGGATACTAAAGTAACTATGCAAATTAGGCAAACACAACCACAACATTAATGCTTTTTAATTGCAGAATGGAATTTCTGCAATGCAATTCCTGATCACGTCAGTTGCTTTTAAGTGTTAGATCTGTAGTTAAAGTGAATTGCGGGTGTTTATAGTGAGGGTTTTTGCATTTGAATGCTTAGTGAAttcaccttttttattttttttggcaaattCTAGTTTTTAACTTTTGAGGCTTAAAGAgatcatatacacacaaacaatgTACACACAGTTTAAAGTCTACTGattgacaattattattatagtagaaTCTTATTTTATAAGTATTTTACTTAAATCCTTTCCAGGATACTGAAAAACTTTAAAAGCTGTCTGAGGTAAATGCAGAATGTGgggaattaaaaatgtattaaacattttCTTTGCATGAATGTTGGGAATAAATTGGAACAAATTAGTAAGGCTTTAGTAATGCTAATCTCTTCAGtactctaagggtgctttcacacttggttcaattgcctggaccgaaCCCAAGTTTGATTGTCCCCCCTAGCCACTTTCTCGGCTGGTTCGTGCTTACACcgtcttttttcttttctaaaccccgctacgcttgcgtcatcaagctgctgcTTCGTGTACAGATGTTGCTAGGTGATAGCTTCAAAAGCAAAGCAACAAAATGGAGACGTCCGCATATCACGGTCATTCTGCAAAATCAAAATACAGAGAGCCACTCTGTATCCGGTCTATCCGTCTGCGTCCATCTGctgcaaaaataaatttaaaaatgtccaGAACATCACATGATTTCTGCAGAAGTCATTTTCAGTGGAGACAAGCAGATATtcggctctattttgacgatccatTTAGACTCGAGTATGGTTCACAGGTGCACacctgagttcagaagacacgtttacactagctaaacataccgtactatgacgtcaaatgaacccgggtgcggaccaaaagggctagtgtgaaagcaccctaaaaacaaaagctaacaacaacaaaatttgctaaattacattattaaactCCTGCCAACTGAAATTGCAATAAATTTGCAATGCAATTGAATCCATAACATTTTGTGTGAAACAGTAGCTAATCAGTA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00019232 lncRNA downstream 708021 40358332 ~ 40360753 (-) False XLOC_009471
TCONS_00018603 lncRNA downstream 708190 40356379 ~ 40360584 (-) False XLOC_009471
TCONS_00018604 lncRNA downstream 708350 40356379 ~ 40360424 (-) False XLOC_009471
TCONS_00018601 lncRNA downstream 708354 40356379 ~ 40360420 (-) False XLOC_009471
TCONS_00018602 lncRNA downstream 708653 40357413 ~ 40360121 (-) False XLOC_009471
TCONS_00019234 lncRNA upstream 166048 41238245 ~ 41245821 (-) False XLOC_009474
TCONS_00018610 lncRNA upstream 166048 41238245 ~ 41246009 (-) True XLOC_009474
TCONS_00019235 lncRNA upstream 568244 41640441 ~ 41667355 (-) False XLOC_009483
TCONS_00018634 lncRNA upstream 570657 41642854 ~ 41667355 (-) True XLOC_009483
TCONS_00019236 lncRNA upstream 648854 41721051 ~ 41744848 (-) False XLOC_009486
TCONS_00018599 mRNA downstream 801289 40217256 ~ 40267485 (-) False XLOC_009470
TCONS_00018600 mRNA downstream 822378 40220678 ~ 40246396 (-) False XLOC_009470
TCONS_00018593 mRNA downstream 892880 40137564 ~ 40175894 (-) False XLOC_009469
TCONS_00018607 mRNA upstream 97014 41169211 ~ 41234144 (-) False XLOC_009473
TCONS_00018608 mRNA upstream 100357 41172554 ~ 41235027 (-) False XLOC_009473
TCONS_00018609 mRNA upstream 106446 41178643 ~ 41234139 (-) True XLOC_009473
TCONS_00018611 mRNA upstream 177575 41249772 ~ 41290415 (-) False XLOC_009475
TCONS_00018612 mRNA upstream 215922 41288119 ~ 41310340 (-) False XLOC_009475
TCONS_00018590 other downstream 999647 40069011 ~ 40069127 (-) True XLOC_009467
TCONS_00018535 other downstream 3339608 37727834 ~ 37729166 (-) True XLOC_009432
TCONS_00018517 other downstream 4194408 36874251 ~ 36874366 (-) True XLOC_009420
TCONS_00018513 other downstream 4535527 36529465 ~ 36533247 (-) True XLOC_009417
TCONS_00018488 other downstream 5856537 35167295 ~ 35212237 (-) True XLOC_009400
TCONS_00018622 other upstream 321204 41393401 ~ 41396073 (-) True XLOC_009478
TCONS_00018633 other upstream 457063 41529260 ~ 41543440 (-) True XLOC_009482
TCONS_00018660 other upstream 1205476 42277673 ~ 42283815 (-) True XLOC_009502
TCONS_00018661 other upstream 1456593 42528790 ~ 42528904 (-) True XLOC_009503
TCONS_00018665 other upstream 1656273 42728470 ~ 42728586 (-) True XLOC_009507

Expression Profile

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