RNA id: TCONS_00018607


Basic Information

Item Value
RNA id TCONS_00018607
length 5705
RNA type mRNA
GC content 0.42
exon number 11
gene id XLOC_009473
representative False

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 41169211 ~ 41235027 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TTTAGAGCTGATTCCTGGTGTGCAGACTCATCAGAGTACACGACACACACACCGTAAGATAATCATCTGTTGATAAAACATCCTCCAGATGAGCAGCAGAAGATCATGGCTTCAGCTGAGCAACTAGACATGGAGGTGATGACGCCGCTGATGGAGAAAGCAGAAggtgaagaagaggaggaggatgagAATGTAGATGGTGATGAAGATTCCAAGCATCTTCCTCAAGGCATCACGTTTACTCAAACTCTGCTGCATCTTTTAAAAGGGAACATCGGCACAGGATTGCTCGGGCTTCCTCTAGCAGTGAAGAATGCTGGCATAGTGTTGGGTCCGGTTAGTCTGGTTCTGATGGGTGTAGTGTGTGTCCACTGCATGCACATCCTGGTCAACTGCAGCCATCAGCTGAGTGAGCGgttgaAGCGTTCTCCCCTTGGTTACAGTGAAACAGTTGCTGCTGCTATGGAGTTGAGTTCCTCCCAGTGCCTGAGGAGAAGTGCTCATTTTGGAAGGCACTTGGTGAATTTCTTCCTGGTTTTGACCCAGCTGGGCTTCTGTAGTGTTTATTTCGTATTTCTGGCTGAAAACATTAAACAGGTTATGGAGGGCACTCATATGAACTCGACGGCAGAAACTGTGCTGTTATCCTCCAACAGCTCAGAAGCGAGTGTCGCCTCTTCTGTCGCAATAGATCTGCGCCTCTACATGGTCTTCCTCCTTCCCTTCATCATTGTGCTGACCTTCATCAGAGACCTGCGCAATATGGCCGCTCTGTCCGCCATCGCCAACCTCTGTATGGCCATCAGCCTCATCTTCATCTTCTCTTATATACTCAATGATTTGAGTGATCCCAGACGTCTGCCATACGCCTCCACATGGAGAAAGTTCCCCTTCTTCTTCGGCACAGCCATATTTGCCTTTGAGGGAATCGGAGTGGTTCTTCCATTAGAGAATCAAATGAGGGAGCCCAAGCGATTCCCTCAGGCCCTCAACATTGGCATGGGCTTCATCATCGTCCTTTATGTAACGCTGGCCACTCTGGGCTACCTGCGCTTCAGAGATGACATCAAAGGCAGCATCACGCTAAACCTTCCACACGACTCCTGgtccAATCAGCTGGTGAAGGTCTTGTACTCTTTCGGAGTGTTTGTGAGTTTTGCAGTGCAGTTTTTCGTGCCGGCAGAGATTCTGCTTCCGCCGATGTGTGAACGAGTCCGAAAGAGCTGGAGACGAGTGGCTGATCTTAGCCTTAGAGCACTGCTCGTCTGCCTCACCTGTGTAACAGCAGTGTTGATCCCGCGGTTGGACCTGGTGATCTCTCTGGTGGGTGCAGTGAGCAGCTCAGCATTAGCGCTGGTTTTCCCTCCTCTGGTGGAGCTGATAGCGTTTCCCAGTCAGCCTCCTCCACCAATGCTGCTCCTCAAAGACATCTCCATCGCCGCTCTCGGCTTCATCGGCTTCCTCACGGGAACTTACGTGACGGTGGAGGAGATCATTTATCCAGACGTCCAAGGACAGATCCGTCTCCATGATGACGGGAACTGGACCACACCCACTACCTCAACACCCTGAAGACCACGCCCACAAATGAAGGACCAATCAAATTCCATGTATAAACAGGATGCTGCCATTTTTGTAACACCATAACAACAGAAACTTCTTCCTATAGCTACGTTTTACAATCCCAGTAGTCACACTCCTCAGCTCTGCCCATTTCATTTAACGTCGGACCTGTATTCTAATTCAACAACAAGTGCCCTGTAAAGTGGACTCCGCAGGATGTTCAGCCATAATTTCAGGGAGCATGTAAATGTTTCTTTCGTATTGCATTTGAGCGTGTGAGATCGGAATTTATATTGGATTTATTTATGGAAATATAATAGCTCTTCTCGAGTATAGCGCTGCAGTGTGAATCTGTGAATGAGCATTCTGAAGTGAAATAAAGGTTGCTTAAGCGTTGGGAGAGTATAATGGAGAAAGGACTAGAGAACAGTGCACACTGCTTAGGGATCTCAAGCCAcgttcacactgcactttttgccccatagactgaatttttttttttttcgtctttaaaacttaattctcaaagcactttacacttAAAAATACAACGATAGCAGAAAATAAAGAGTAATGCAGaagataaaaattatatatataaaaattaggaCAAGTCAGAAACATTGTAACCATAAAACCGATCAAAAATCACGTCACAAATCatgtctaaaaaataaataaataaaattcttcaGGGATACTTAAAATTTCTTAAGatttttacattacattctttaaaAGACTTGGATTCATATTCATGCAAATGCTGTAGATCTGAAacacaagcttgtgcgacaagtttcgcttGTCACTGTATTCCcaacctgcgaaattgcatcacttgattGTATGAGACCAATAGAAGTTCAAAACGTGACCTTTCTGTACAGAAATGTTAtatatggagcaatcactcgctttatcaatgtctaatcatcttgttttatccaGCCTGTTTTTATAGTACCATACGATAGACTTTCAGCAAGCTCAAACTCTACAGTAATGTTATCAAAAGTTTTGATTTCGgtactgacattttttttaaacgcaAACATTTCAACAATGTTGAGCAAGTTCTTAGATGCCGCTAATTGGCTATTGTGTTTATATGCTCAACagaatgactgtgattggccgtgaaggtaaTCTGTTTACCACTCTTCATTGCTGGTCACCAAGTGCAAACATACATGGACACTGGAACAGCTTCGAAGGTAGTGTTGAGGCTTCGAATCGTTTCAAAACCCGACTACAatgacatctagtggtcattttttatgtattgacCTTAAACAACTTCAACCAACTTTAATATAATGATTTTGGTACTGAAATATTCAGTAATTTGACAACACTAAACCAGTGGTAGGCCAAGCGCCGCATTGTGAAACACTGAAAGTCAAAGCAAATGTGTTGAGGCTTTGAATTGTTTCAAAACCTGACTCTATAGTGaaattgtgttaatttttttgaAGTATTGCCCTTAAACAACTTTACTATATTGATTTCGGtactgaaatgttttttaaaaagtcaatttcCCCCAAACAATTAAGCACTGTTGAGCAAgttcttaaacaccactgattggaCATTGAGTttacctgctcaacagaaatgactgtgattggctttGAAGCTCATCGGTTCACAACTCCTCATCGCTGGTCAGAGTTTCAATATAGATAAACGGACACTTGAACGTTTCAAAGCCATGTAGGTACTTCTGACAACACTGTCCAGCACTACTCTAGAGTAGAGTAAGGCTTCATGAACCACTGAAACAATCAAAGCAAATGTGTCAAGGCTTCAAAATGTTTCAAAACCCAACTCGACAATGACATCTAGGGGTCTTTTTTTATTGCCCCTAAACAACTTCAATATATCGAGTTCggtacttttgacaacactaaacTAGTGGTAGGCAGAGCGACGCATCGTGAAACACATAAATAGTCGAAGAAAATGTGTCGAGGCTTCGAAACcgactctacagtgacacctagtggtattttaaaaagaatattgcTCAAACAATTTCAACAAAGAAACAGTTATGCGAATTAAGCAATTAAAGCCCCTGTTGTTTCAACAAGACACCAATAAATTTAGTGGAGTGGTTAGTGTTCTTAACTGGCGTGCAGACGTATTGGGTTCGAATCTAGATAAAGCAATCATGGTAAttaaaagtttgttattttattgctccgttcttgtgtgttttgttttaacatcagTCTGGATGAACTCAATCCGAATGAACTCTGCAAATAAAtatgtgttgttttggtcataaaaagtcTACATGAATACAAGACAATAAGTCACGATTTCTGAATGCTTGTACAACTGGGATTCAAACTCAGGTCACTCACAGCACAGGTGCATTATACACGCATACACAGTCCTCTTAACAactgtttcccaaccctgttcctggaggcacaccaacaagACATGTTTTGGATGTATctcttatctgacccattaacttcagcTTTTGGAGTCTCTTACATTcagatgagttgattcaggtgtgtttgattaggaagaggttggaAAATGTGTACTGCTGGTGTGCCTTCAgcaacagggttgggaaacactgcactAAGTTACAGGAGATGGTGGTTTTGCTTCAGACCCCATCACTGAAACACAGATTTGCCAGGTCAATCCTTTGAATCGCTTTaatcacatgacctgggtgttttgaaacATCTGAGCAGGGTTTGGAAGGCTCTGCGGCTTGGGATCTCTTCAGTCAGAACACACATGGATCTCTTCTAACATACTGGATATCCGAATTAGCTGTGTTAAATCAAGGAGACATGCACAATATGCAGATTGAAGTGGGGTGTGAGGACAGGGATTGAAAAACGATGTTCTATAGGAAGTGAGtgactgctgctctgggatggaGAACTTGTCTTTGCTGGCTTGAGGTGCTTTTTTATTGCTCAATTTGTTTTCCATTCCACATGCACATGCCCAAGGTGTGCTGCTGTAGCATGGACGTGTGTGTGCGGGAGTGAGTGATGGTGTGTATGAAGAATATTATTCTCCGCACAGCCGTATGGACTTCCCATGACTCCACCCCTGTTCCTCGATGGAATGGCTTTTACTCCATCGGGTCGCTGGACCGTATAGCATGACAAGCCGTCAGCATTAAACACTGCGGGAGAGCGCCAGAGAAATATTGCACACTGTAAAGAATGTACGTTCCCGCTGACTAGAGCTGTTATTAATAAACTAATCATTCCTCCTGAGGcttgtgatatttaatttttttttttgttccttctCCCTGACCGCGGCAGGATTCATTGGGAATAATGAGTATTTTAATTACTGACAAACATTGCACAAAACCAGTGCGAGCCTTTAAACTGTTAAGTAAGAATCCACTCGCTTTGATTTTAGCAAACGAGCATATTTGCATATATACAGATCTATTCTGGAGCCGTATCGACCGCATCAGTGGTGTACAGTGTGTGGAGGTGAATTCGCACAGACATCATTTTCATGTTGTTCCTCGGTTTGTGAAGACAAGCAAAAATCGTGTTTGCACTATTGCACACACAACAAAAGACATTGCAGAAGCTTTTTAGCTCTGAACTACATtagtgtgaaaatgtctttgtaaTTAATCCGATTAGTAGTGTTTTCTGATTGTTCCCAAGAATCCTGAAGGTGGATTTTCCGACTCCACTGTTTATCAGCATAATTATTGGTTTTCAAACCTACTTTGTTTTTCGTGGttcctttttacagtgtaatttttgaagggatagttcaggcaaaacttaaaatgcacccTATTTACtctgaaatctgaaaacctgcaagcatcgacttccatagtaggagaaacaaatactacgaaagtcaatggttacagcaaGTCAAAATGATGACTAAAAACGACTAAATACACTGGCAATTATTGACCTGGAAAGGAAGAGTCTTACTGCAGCTCTGATAGACTAACAGTGCCAAGGTTGTGGGTTTGACTCCTGATAAAAGACGAGTCGTCAATGCAGTGCAAGTGGCTttctttagggcctactcacactatgccatccctaccgtgcccaggcccatttcccggaacgtttgagaagtgtaagagcgctgaa

Function

GO:

id name namespace
GO:0015808 L-alanine transport biological_process
GO:0003333 amino acid transmembrane transport biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0015171 amino acid transmembrane transporter activity molecular_function
GO:0015180 L-alanine transmembrane transporter activity molecular_function
GO:0015193 L-proline transmembrane transporter activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050309-239 Predicted to enable L-alanine transmembrane transporter activity and L-proline transmembrane transporter activity. Predicted to be involved in L-alanine transport and amino acid transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human SLC36A4 (solute carrier family 36 member 4).

Ensembl:

ensembl_id ENSDART00000186215

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00019233 lncRNA downstream 97014 41068774 ~ 41072197 (-) True XLOC_009472
TCONS_00019232 lncRNA downstream 808458 40358332 ~ 40360753 (-) False XLOC_009471
TCONS_00018603 lncRNA downstream 808627 40356379 ~ 40360584 (-) False XLOC_009471
TCONS_00018604 lncRNA downstream 808787 40356379 ~ 40360424 (-) False XLOC_009471
TCONS_00018601 lncRNA downstream 808791 40356379 ~ 40360420 (-) False XLOC_009471
TCONS_00019234 lncRNA upstream 4101 41238245 ~ 41245821 (-) False XLOC_009474
TCONS_00018610 lncRNA upstream 4101 41238245 ~ 41246009 (-) True XLOC_009474
TCONS_00019235 lncRNA upstream 406297 41640441 ~ 41667355 (-) False XLOC_009483
TCONS_00018634 lncRNA upstream 408710 41642854 ~ 41667355 (-) True XLOC_009483
TCONS_00019236 lncRNA upstream 486907 41721051 ~ 41744848 (-) False XLOC_009486
TCONS_00018599 mRNA downstream 901726 40217256 ~ 40267485 (-) False XLOC_009470
TCONS_00018600 mRNA downstream 922815 40220678 ~ 40246396 (-) False XLOC_009470
TCONS_00018593 mRNA downstream 993317 40137564 ~ 40175894 (-) False XLOC_009469
TCONS_00018596 mRNA downstream 1011698 40154158 ~ 40157513 (-) False XLOC_009469
TCONS_00018595 mRNA downstream 1011880 40154158 ~ 40157331 (-) False XLOC_009469
TCONS_00018611 mRNA upstream 15628 41249772 ~ 41290415 (-) False XLOC_009475
TCONS_00018612 mRNA upstream 53975 41288119 ~ 41310340 (-) False XLOC_009475
TCONS_00018613 mRNA upstream 56804 41290948 ~ 41311295 (-) False XLOC_009475
TCONS_00018614 mRNA upstream 69668 41303812 ~ 41311292 (-) False XLOC_009475
TCONS_00018615 mRNA upstream 71737 41305881 ~ 41311295 (-) True XLOC_009475
TCONS_00018590 other downstream 1100084 40069011 ~ 40069127 (-) True XLOC_009467
TCONS_00018535 other downstream 3440045 37727834 ~ 37729166 (-) True XLOC_009432
TCONS_00018517 other downstream 4294845 36874251 ~ 36874366 (-) True XLOC_009420
TCONS_00018513 other downstream 4635964 36529465 ~ 36533247 (-) True XLOC_009417
TCONS_00018488 other downstream 5956974 35167295 ~ 35212237 (-) True XLOC_009400
TCONS_00018622 other upstream 159257 41393401 ~ 41396073 (-) True XLOC_009478
TCONS_00018633 other upstream 295116 41529260 ~ 41543440 (-) True XLOC_009482
TCONS_00018660 other upstream 1043529 42277673 ~ 42283815 (-) True XLOC_009502
TCONS_00018661 other upstream 1294646 42528790 ~ 42528904 (-) True XLOC_009503
TCONS_00018665 other upstream 1494326 42728470 ~ 42728586 (-) True XLOC_009507

Expression Profile

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