RNA id: TCONS_00018616


Basic Information

Item Value
RNA id TCONS_00018616
length 3450
RNA type mRNA
GC content 0.41
exon number 8
gene id XLOC_009476
representative False

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 41312032 ~ 41523292 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGTGCAGATCAGATCCTGTTTCATAATGGACGACAAACAAATATCCAGAGATGAAAATGTTTCTCCAGGATGCAGTTTAGTTCATCAGAAGAGATCAGAtccagagcccagctgtgtgtctatgaggaGTGACTGGTCTATGGATCATCCAAATAATTTTGGAAGTGAAAATACACAGATTGATCTCAGTTCATTTCATCACAAGAGAACAGAAGCAGAGGCCAGCCGTGTGTCTATGAGGAGTGACACGTTTATGAATCATCCAATAAATATTTGGAAAGTAGAAGCACAGTGTAATATCAGGTAAAATCTttctttaaaagatttaattacagaaattaaaaaggCAGCATGCTTATTAACTCATGTTACTGTGTGGATTTTCCAGACAAAACTTGCTGAACACATTTAGATCAAATCTGCTGAAGAAGTTTGAGTGTCTGTATGAGGGAACAGCGGCGCAGGGAAACCCAACACTCCTGAATGAGATCTACACAGAGCTCTACATCACAGAGAGTGAGAGTGGAGAGATCAGTCATGAGCATGAGGTGAGACAGATTGAGACACAATCCAGGAGATCAACAACAGAGGACACAGCGATCAAATGCAGAGACATCTTTACACCTTTACCTGGACAAGACAAAGCCATCAGAACTGTGCTGACGAAGGGAGTCGCTGGCATCGGAAAAacagtctctgtgcagaagttcatcctGGACTGGGCTGAAGAGAAGGAGAATCAGGACGTCCAGCTCATATTTCCACTTCCTTTCAGAGAGATCAATCTGATGAAGGACAAAACACTCAGTCTGTCAGATCTTCTTCAGCTCTTTTTCCCTCAAACTAAAGAAATGGAAATATCCAGTGACAAATATAAAGTgctgttcatctttgatggtctggacgAGTGTCGTCTTCCCTTAAATTTCAAAAGGATTAAGACTCTGAGGGATGTGACCAAAACATCATCAGTGGACGTGCTGCTGATGAACCTGATTGTGGGgaatctgcttccctctgctctcatctggatcacctccagaccagcagcagcagatctcGTCCCCTCTGAGTGTGTCCATCGAGTGACAGAGGTACGAGGCTTCAATGACTctcagaaggaggaatacttCAGCAAGAGAATCAGTGATCAGAGTCTGGCCAATACAATCATCTCACACCTGAAGTCCTCCAGGAGCCTctacatcatgtgccacatccctGTGTTCTGCTGGATCTCAGCCACTGTTCTAGAGAAGATGTTGAGTGAAGCAGAGACTGCAGAGATTCCCAAGACTCTCactcagatgtacacacacttcctGATCCTGCAGACCAACATCAAACATCAGAAGGACTATGAGAAGAAGCTGACAGATGAAGACATGATCCTCAAACTGGGGAAAGTGGCTTTTCAGCAGCTCATGAAAGGCAATATAATCTTCTATGAGGAAGACCTGAGAGAGTGTGGCATTGATGTGGCAGAAGCTTCAGTTTACTCAGGATTGTGCACTCAGATCTTCAGAGAGGAGTTTGGCTTGTATCAGGGGAAAGTCTTCAGCTTTGTTCATCTGAGCATTCAGGAACATCTAGCAGCTCTATATGTGCACCTCTCCTGTATAAACAATAACAGAGATGAGTTTGAGCAAATCAACAAACCGAGTTTGTGGTCTCAAGTTAAAGACTTGTTTCAGCTCAATTCTTTAGAATGTGTTTCATTATCCAAACTGAATCAGCGAGCTGTAAATGAGGCTCTAAAGAGTCAAAATGGACATCTGGATCTTTTCCTGCGGTTTCTTCTGGGTCTGTCAGTGGAGTCTCATCAGATTCTCCTAAAAGGACTAATGACACTGAAAAGCAGATCAATCCAGAATAATAAAACAGTCGAGTACATCAAGAAGAAGATCAGGACCATCGACTCTCCAGAGAAATCCATCAATCTGTttcactgtctgaatgaactgggTGATCATTCACTAGTGGAGGAAATACAGCAGTTTCTAAAATCTGGAAGAATAAACAGAGCCAAACTCTCCTCATCTCAGTGGTCAGCTGTAGCGTTTGTGTTGTTGACATCAGAGAAGAAGCTGGAGGAGTTTGATATTAATGAATTTGTTGCTGaaaacaataaaactgaaaaacagcTCATTTTTAAGAAGCTGCTGCCCGTGATTAGAGAATGCAGATCAGTTCAGTTGTATGATTGTGGTCTCACAGAtgaaggttgtgctgctttggcttcagCTCTAAAATCAAACCCTGAACACCTAAAAGATCTGAATCTGTCTAGGAATAGACTAAgagattcagtgactcttctctctgctgtactggaggatcctcactgtaaactggagaaactGGGGTTGTATGATTGTGGTCTTACAGATAaaggttgtgctgctttggcttcagctctgagatcaaaccctgaACACCTGAGAAATCTGAATCTGTCCTGGAATAATCtaggagattcagtgactcttctCTCTGCTGTACTGAAGGATCCTCGCTGTAAACTGGAAACACTGCGGTTGAGTTATTGTGGTCTTACAGATGAAGattgtgctgctttggcttcagctctgagatcaaacaTTGAACACCTGAGAGATCTGAATCTGTCTGGGAATTATCTAAAAAAGTCAGTGACTCTTCTCTCTGCTGTACTGGAGGATCCtcgctgtaaactggagacactgagGTTGGGTGATTGTGGTCTCACAGATAaaggttgtgctgctttggcttcagctctgagatcaaaccctgaACACCTGAAACATCTGGATCTGTCTGACAATCTACAAATAATATCCTCATGGAAGCTGTTCTCTGATCTGATGGACGACCCACTGAATAAACTGGAATTTTGTGATTTTCAGTGTTCAGGATTTCCTGGTTATGAATAAGGAGAAACGTCACAGACACACAATCAACACACACTGAAGACACACAGACTCGCACTGACTTCACAACACTGGCTTATTTTCATATGCAATAACCAGGAAAAGGAAAATGACGTCATTATATTGTTCAGATCGTCCAGATATTGATTATAGTGGAAAATgggattttaaaataacaaaactaaagCACTTCTATTGTAATCAGTCAGTCATGTTGACATTGTGTAAATATGAAATGTGTCGTGCAGCACAGACAGCTTTGTTCCTTATATTGGAAAAGTAAGATTCTTTTGTTTAATTACTCTTTTAGTATAATCTTGGTTTTACAAGGTTTACTCTGAGAAAATCAAGACTTTGGCTACAGAAGAGATGTTGTGTCTGAAATGTGTCAGCAGAGGTCGACAAAGTGAAAGTAATTCATTTAACTGAGCATTTAATTCACTACAATGTTTGTAAATGAATGATGTGTAATTATTTAACTGATTTAACACGCTCATCTATTAATATTCCCACTTCACTTTTCTTGATGACAAACATT

Function

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process
GO:0005524 ATP binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070912-363 Predicted to be involved in intracellular signal transduction.

Ensembl:

ensembl_id ENSDART00000144678

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00018610 lncRNA downstream 66023 41238245 ~ 41246009 (-) True XLOC_009474
TCONS_00019234 lncRNA downstream 66211 41238245 ~ 41245821 (-) False XLOC_009474
TCONS_00019233 lncRNA downstream 239835 41068774 ~ 41072197 (-) True XLOC_009472
TCONS_00019232 lncRNA downstream 951279 40358332 ~ 40360753 (-) False XLOC_009471
TCONS_00019235 lncRNA upstream 307377 41640441 ~ 41667355 (-) False XLOC_009483
TCONS_00018634 lncRNA upstream 309790 41642854 ~ 41667355 (-) True XLOC_009483
TCONS_00019236 lncRNA upstream 387987 41721051 ~ 41744848 (-) False XLOC_009486
TCONS_00018843 lncRNA upstream 720775 42053839 ~ 42058846 (-) True XLOC_009494
TCONS_00018655 lncRNA upstream 731119 42064183 ~ 42066345 (-) True XLOC_009495
TCONS_00018613 mRNA downstream 737 41290948 ~ 41311295 (-) False XLOC_009475
TCONS_00018615 mRNA downstream 737 41305881 ~ 41311295 (-) True XLOC_009475
TCONS_00018614 mRNA downstream 740 41303812 ~ 41311292 (-) False XLOC_009475
TCONS_00018612 mRNA downstream 1692 41288119 ~ 41310340 (-) False XLOC_009475
TCONS_00018611 mRNA downstream 21617 41249772 ~ 41290415 (-) False XLOC_009475
TCONS_00018619 mRNA upstream 16204 41349268 ~ 41382344 (-) False XLOC_009477
TCONS_00018620 mRNA upstream 16204 41349268 ~ 41382470 (-) False XLOC_009477
TCONS_00018621 mRNA upstream 19650 41352714 ~ 41390410 (-) True XLOC_009477
TCONS_00018623 mRNA upstream 67456 41400520 ~ 41408148 (-) True XLOC_009479
TCONS_00018624 mRNA upstream 89184 41422248 ~ 41438821 (-) True XLOC_009480
TCONS_00018590 other downstream 1242905 40069011 ~ 40069127 (-) True XLOC_009467
TCONS_00018535 other downstream 3582866 37727834 ~ 37729166 (-) True XLOC_009432
TCONS_00018517 other downstream 4437666 36874251 ~ 36874366 (-) True XLOC_009420
TCONS_00018513 other downstream 4778785 36529465 ~ 36533247 (-) True XLOC_009417
TCONS_00018488 other downstream 6099795 35167295 ~ 35212237 (-) True XLOC_009400
TCONS_00018622 other upstream 60337 41393401 ~ 41396073 (-) True XLOC_009478
TCONS_00018633 other upstream 196196 41529260 ~ 41543440 (-) True XLOC_009482
TCONS_00018660 other upstream 944609 42277673 ~ 42283815 (-) True XLOC_009502
TCONS_00018661 other upstream 1195726 42528790 ~ 42528904 (-) True XLOC_009503
TCONS_00018665 other upstream 1395406 42728470 ~ 42728586 (-) True XLOC_009507

Expression Profile

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