RNA id: TCONS_00018617


Basic Information

Item Value
RNA id TCONS_00018617
length 2666
RNA type mRNA
GC content 0.41
exon number 5
gene id XLOC_009476
representative False

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 41312032 ~ 41523292 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

aatcttatttaaatataatataaatagtgATTAAGATGAATTGGTCTGTTATTTTCTGTTATAGTTTAGTTCATCAGAAGAGATCAGAtccagagcccagctgtgtgtctatgaggaGTGACTGGTCTATGGATCATCCAAATAATTTTGGAAGTGAAAATACACAGATTGATCTCAGTTCATTTCATCACAAGAGAACAGAAGCAGAGGCCAGCCGTGTGTCTATGAGGAGTGACACGTTTATGAATCATCCAATAAATATTTGGAAAGTAGAAGCACAGTGTAATATCAGACAAAACTTGCTGAACACATTTAGATCAAATCTGCTGAAGAAGTTTGAGTGTCTGTATGAGGGAACAGCGGCGCAGGGAAACCCAACACTCCTGAATGAGATCTACACAGAGCTCTACATCACAGAGAGTGAGAGTGGAGAGATCAGTCATGAGCATGAGGTGAGACAGATTGAGACACAATCCAGGAGATCAACAACAGAGGACACAGCGATCAAATGCAGAGACATCTTTACACCTTTACCTGGACAAGACAAAGCCATCAGAACTGTGCTGACGAAGGGAGTCGCTGGCATCGGAAAAacagtctctgtgcagaagttcatcctGGACTGGGCTGAAGAGAAGGAGAATCAGGACGTCCAGCTCATATTTCCACTTCCTTTCAGAGAGATCAATCTGATGAAGGACAAAACACTCAGTCTGTCAGATCTTCTTCAGCTCTTTTTCCCTCAAACTAAAGAAATGGAAATATCCAGTGACAAATATAAAGTgctgttcatctttgatggtctggacgAGTGTCGTCTTCCCTTAAATTTCAAAAGGATTAAGACTCTGAGGGATGTGACCAAAACATCATCAGTGGACGTGCTGCTGATGAACCTGATTGTGGGgaatctgcttccctctgctctcatctggatcacctccagaccagcagcagcagatctcGTCCCCTCTGAGTGTGTCCATCGAGTGACAGAGGTACGAGGCTTCAATGACTctcagaaggaggaatacttCAGCAAGAGAATCAGTGATCAGAGTCTGGCCAATACAATCATCTCACACCTGAAGTCCTCCAGGAGCCTctacatcatgtgccacatccctGTGTTCTGCTGGATCTCAGCCACTGTTCTAGAGAAGATGTTGAGTGAAGCAGAGACTGCAGAGATTCCCAAGACTCTCactcagatgtacacacacttcctGATCCTGCAGACCAACATCAAACATCAGAAGGACTATGAGAAGAAGCTGACAGATGAAGACATGATCCTCAAACTGGGGAAAGTGGCTTTTCAGCAGCTCATGAAAGGCAATATAATCTTCTATGAGGAAGACCTGAGAGAGTGTGGCATTGATGTGGCAGAAGCTTCAGTTTACTCAGGATTGTGCACTCAGATCTTCAGAGAGGAGTTTGGCTTGTATCAGGGGAAAGTCTTCAGCTTTGTTCATCTGAGCATTCAGGAACATCTAGCAGCTCTATATGTGCACCTCTCCTGTATAAACAATAACAGAGATGAGTTTGAGCAAATCAACAAACCGAGTTTGTGGTCTCAAGTTAAAGACTTGTTTCAGCTCAATTCTTTAGAATGTGTTTCATTATCCAAACTGAATCAGCGAGCTGTAAATGAGGCTCTAAAGAGTCAAAATGGACATCTGGATCTTTTCCTGCGGTTTCTTCTGGGTCTGTCAGTGGAGTCTCATCAGATTCTCCTAAAAGGACTAATGACACTGAAAAGCAGATCAATCCAGAATAATAAAACAGTCGAGTACATCAAGAAGAAGATCAGGACCATCGACTCTCCAGAGAAATCCATCAATCTGTttcactgtctgaatgaactgggTGATCATTCACTAGTGGAGGAAATACAGCAGTTTCTAAAATCTGGAAGAATAAACAGAGCCAAACTCTCCTCATCTCAGTGGTCAGCTGTAGCGTTTGTGTTGTTGACATCAGAGAAGAAGCTGGAGGAGTTTGATATTAATGAATTTGTTGCTGaaaacaataaaactgaaaaacagcTCATTTTTAAGAAGCTGCTGCCCGTGATTAGAGAATGCAGATCAGTTCAGTTGTATGATTGTGGTCTCACAGAtgaaggttgtgctgctttggcttcagCTCTAAAATCAAACCCTGAACACCTAAAAGATCTGAATCTGTCTAGGAATAGACTAAgagattcagtgactcttctctctgctgtactggaggatcctcactgtaaactggagaaactGGGGTTGAATAAGTGTGGTCTCACAGGAAAAGGTTGTGCTGCTTTGATTTCAGCTCTGAGAACTGAATCTGTCCTGGAGCAATCTAGGATATTCAGTGACTCTTCTCTCTGCTGTACTGGAGGATCCTCGCTGTAAACTGGAGAAACTGGAGTAAGATCATATTTGACTCTCACATGTAAAACAgagtaaagtaaataataaaaatacattttataaaaacaaagtaaaaggAATGTTTGCTTGGCTTTCTTTTGCAATTTGCTGAttgcataaaatcaaataatttgaGTTTTTCTTCTTTTAACTAACATTAACGTCAGCTCTGACAGTCAACAACACATTCACTCTCAGTCAAAAATGTAACATcatcaaatcatttttatttttatttatgtcaaT

Function

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process
GO:0005524 ATP binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070912-363 Predicted to be involved in intracellular signal transduction.

Ensembl:

ensembl_id ENSDART00000170014

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00018610 lncRNA downstream 70559 41238245 ~ 41246009 (-) True XLOC_009474
TCONS_00019234 lncRNA downstream 70747 41238245 ~ 41245821 (-) False XLOC_009474
TCONS_00019233 lncRNA downstream 244371 41068774 ~ 41072197 (-) True XLOC_009472
TCONS_00019232 lncRNA downstream 955815 40358332 ~ 40360753 (-) False XLOC_009471
TCONS_00019235 lncRNA upstream 307576 41640441 ~ 41667355 (-) False XLOC_009483
TCONS_00018634 lncRNA upstream 309989 41642854 ~ 41667355 (-) True XLOC_009483
TCONS_00019236 lncRNA upstream 388186 41721051 ~ 41744848 (-) False XLOC_009486
TCONS_00018843 lncRNA upstream 720974 42053839 ~ 42058846 (-) True XLOC_009494
TCONS_00018655 lncRNA upstream 731318 42064183 ~ 42066345 (-) True XLOC_009495
TCONS_00018613 mRNA downstream 5273 41290948 ~ 41311295 (-) False XLOC_009475
TCONS_00018615 mRNA downstream 5273 41305881 ~ 41311295 (-) True XLOC_009475
TCONS_00018614 mRNA downstream 5276 41303812 ~ 41311292 (-) False XLOC_009475
TCONS_00018612 mRNA downstream 6228 41288119 ~ 41310340 (-) False XLOC_009475
TCONS_00018611 mRNA downstream 26153 41249772 ~ 41290415 (-) False XLOC_009475
TCONS_00018619 mRNA upstream 16403 41349268 ~ 41382344 (-) False XLOC_009477
TCONS_00018620 mRNA upstream 16403 41349268 ~ 41382470 (-) False XLOC_009477
TCONS_00018621 mRNA upstream 19849 41352714 ~ 41390410 (-) True XLOC_009477
TCONS_00018623 mRNA upstream 67655 41400520 ~ 41408148 (-) True XLOC_009479
TCONS_00018624 mRNA upstream 89383 41422248 ~ 41438821 (-) True XLOC_009480
TCONS_00018590 other downstream 1247441 40069011 ~ 40069127 (-) True XLOC_009467
TCONS_00018535 other downstream 3587402 37727834 ~ 37729166 (-) True XLOC_009432
TCONS_00018517 other downstream 4442202 36874251 ~ 36874366 (-) True XLOC_009420
TCONS_00018513 other downstream 4783321 36529465 ~ 36533247 (-) True XLOC_009417
TCONS_00018488 other downstream 6104331 35167295 ~ 35212237 (-) True XLOC_009400
TCONS_00018622 other upstream 60536 41393401 ~ 41396073 (-) True XLOC_009478
TCONS_00018633 other upstream 196395 41529260 ~ 41543440 (-) True XLOC_009482
TCONS_00018660 other upstream 944808 42277673 ~ 42283815 (-) True XLOC_009502
TCONS_00018661 other upstream 1195925 42528790 ~ 42528904 (-) True XLOC_009503
TCONS_00018665 other upstream 1395605 42728470 ~ 42728586 (-) True XLOC_009507

Expression Profile

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