RNA id: TCONS_00018635


Basic Information

Item Value
RNA id TCONS_00018635
length 1836
RNA type mRNA
GC content 0.49
exon number 4
gene id XLOC_009484
representative False

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 41670742 ~ 41689981 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TGGCCTAGTATGACGTCACGCACTTACTGGCTTGCGGAACAAAAGCCGTCTGCTCGCTGCGCTCCTCCCGCCGGATGCAACCGACAGGACACCAAGACCTTCGTTTCCcgtaaaagtttgtttttaaagcGTTTACCGTATTGTGTGTTAACATAAACAGCGTCGAAGTGTAAATCCCGGGGCTCGTGACGagtattttttttgtctgaacTCAACCGACGAGGGATTCTCGCGAGAGAGTGTGAGACTAATAAACGCTGTCCGGCTGACGTGGACCCTCCTGGAGTCCTGTGGTGATCTGGAAGGTTTGCTCTCTTCCATCTGAACGTGTTCTTGTGAATGAGACTGTGTCGTctcttctgattggctgaggCTCTCGGGTCGGCTCTGCTCATGAGGTAACACAGCCTGTGGTTGTTGATGCCCGAGGCTGGGCAGTGATGGGGCAGAGGGTATCGGGTGTGGTCAAATCAGCGGATGAGCAGGAGGTGGGTGAGCTGGCGTATCCACCAGTGTGTGCGGCGCTTCGAAATCGAGGTGTCCCTTTACCTGCCCGTCTGGAGCTGCTGTTGGATATGCCTCCGGCTGGTTCGGAAGCCCAGCTTCAGCACGCCTGGAACCCAGACGACCGTTCGCCAAACCTGTTTATCAAAGACGATGACCGGCTCACGTTCCACCGCCACCCGGTGGCCCAAAGCACTGACTGTGTGCGCGGGAAAACCGGCTTCACCCGAGGTTTGCATGCATGGAGTTTACGATGGCCTGTACGGCAGCGGGGCACTCATGCTGTGGTTGGAGTGGCCACTTCTTTAGCTACTTTACGAGCTGTTGGGTATTCTGCTCTAGTTGGAAGTGATGCTGAATCCTGGGGGTGGGATTTGGGACGAGGTCGGCTTTACCATGATCGAAAGAGCCGATCTGGGCCAGCGCCGCCGTATCCGGAGTTCGTGGAAGATGAGGATGAGGAAGGCACGTTCTCTGTGCCGGAGGAGATTTTGGTGGTGTTGGATATGGACGAGGGAACGCTGGGATTCTGTGCTGATGGAAATTATCTGGGAGTGGCGTTTCGAGGGCTGAAGGGGAAGAGGCTGTACCCGATCGTCAGCGCTGTCTGGGGCCACTGTGAAGTCAGCATGAACTACATCAACGGATTAGAtcCTGAACCCCTGCCGCTGATGGAGCTGTGCAGAAGAGCAGCGCGACAGGCACTGGGACGCCACCGAATCCATCACATCCAGTCTCTGCCACTGCCACAGACACTCAAAAACTACCTGCAGTACCAATGAGAGACTCAAACACGCACCTGCGGTCACTGGACACGAGCTGTAGAGTCTTTGCACAGATACGCTCATATATTTAGGATGCCATCAAACGATGAGTACCTGGTTTTTATACATGATTATGAGATGATTGTAATAAAAGGTGTTTTACGTTCATGTCTTCCGTGGAAATATTACTCTTGAGctgatgttttttattattgttcttcACTTTTAACTCAGAACTAAGGACTaaggaaaacaaacagacaaCGAGGTTCTTATTCTGTCACCAGTCTTCACTAATAGACATCCGCAGTGCCTGAGATCTTTTAcaatctttgttttgtttgtttgcgtgcgtattaaatatatatatgtatattttctgTTGTAATCATGACGAAGCTGATTCAATCGGTTTTTAAGCGTATAAACGCGAGGCTTGTTgagatttttacagattttttatatgaatttgatGTTCCTCTTTTACATCACAGATCAAGCAGAAACACAACAGTTGTACATTCATGACCTTTCAAAtgtgaataaaatgaaaacttaaaacaCACAA

Function

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process
GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process biological_process
GO:0006511 ubiquitin-dependent protein catabolic process biological_process
GO:0019005 SCF ubiquitin ligase complex cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-040801-213 Predicted to be involved in proteasome-mediated ubiquitin-dependent protein catabolic process. Predicted to act upstream of or within intracellular signal transduction. Predicted to be located in cytoplasm. Predicted to be part of SCF ubiquitin ligase complex. Orthologous to human SPSB4 (splA/ryanodine receptor domain and SOCS box containing 4).

Ensembl:

ensembl_id ENSDART00000059327

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00019235 lncRNA downstream 3387 41640441 ~ 41667355 (-) False XLOC_009483
TCONS_00018634 lncRNA downstream 3387 41642854 ~ 41667355 (-) True XLOC_009483
TCONS_00018610 lncRNA downstream 424733 41238245 ~ 41246009 (-) True XLOC_009474
TCONS_00019234 lncRNA downstream 424921 41238245 ~ 41245821 (-) False XLOC_009474
TCONS_00019233 lncRNA downstream 598545 41068774 ~ 41072197 (-) True XLOC_009472
TCONS_00019236 lncRNA upstream 31070 41721051 ~ 41744848 (-) False XLOC_009486
TCONS_00018843 lncRNA upstream 363858 42053839 ~ 42058846 (-) True XLOC_009494
TCONS_00018655 lncRNA upstream 374202 42064183 ~ 42066345 (-) True XLOC_009495
TCONS_00018656 lncRNA upstream 390413 42080394 ~ 42086212 (-) True XLOC_009496
TCONS_00019237 lncRNA upstream 415461 42105442 ~ 42106950 (-) True XLOC_009497
TCONS_00018618 mRNA downstream 147450 41320817 ~ 41523292 (-) False XLOC_009476
TCONS_00018628 mRNA downstream 147450 41454639 ~ 41523292 (-) False XLOC_009476
TCONS_00018627 mRNA downstream 147450 41454639 ~ 41523292 (-) False XLOC_009476
TCONS_00018631 mRNA downstream 147517 41498490 ~ 41523225 (-) False XLOC_009476
TCONS_00018632 mRNA downstream 167350 41499903 ~ 41503392 (-) True XLOC_009476
TCONS_00018638 mRNA upstream 3654 41693635 ~ 41708657 (-) False XLOC_009485
TCONS_00018639 mRNA upstream 7777 41697758 ~ 41700406 (-) True XLOC_009485
TCONS_00018640 mRNA upstream 21746 41711727 ~ 41714329 (-) False XLOC_009486
TCONS_00018641 mRNA upstream 21762 41711743 ~ 41734723 (-) False XLOC_009486
TCONS_00018642 mRNA upstream 26740 41716721 ~ 41720173 (-) False XLOC_009487
TCONS_00018633 other downstream 127302 41529260 ~ 41543440 (-) True XLOC_009482
TCONS_00018622 other downstream 274669 41393401 ~ 41396073 (-) True XLOC_009478
TCONS_00018590 other downstream 1601615 40069011 ~ 40069127 (-) True XLOC_009467
TCONS_00018535 other downstream 3941576 37727834 ~ 37729166 (-) True XLOC_009432
TCONS_00018517 other downstream 4796376 36874251 ~ 36874366 (-) True XLOC_009420
TCONS_00018660 other upstream 587692 42277673 ~ 42283815 (-) True XLOC_009502
TCONS_00018661 other upstream 838809 42528790 ~ 42528904 (-) True XLOC_009503
TCONS_00018665 other upstream 1038489 42728470 ~ 42728586 (-) True XLOC_009507
TCONS_00018678 other upstream 1961665 43651646 ~ 43651761 (-) True XLOC_009518
TCONS_00018686 other upstream 2327452 44017433 ~ 44017563 (-) True XLOC_009524

Expression Profile

//