RNA id: CI01000192_00124135_00167418.mRNA


Basic Information

Item Value
RNA id CI01000192_00124135_00167418.mRNA
length 3486
RNA type mRNA
GC content 0.51
exon number 19
gene id CI01000192_00124135_00167418
representative True

Chromosome Information

Item Value
chromosome id CI01000192
NCBI id null
chromosome length 382550
location 123577 ~ 167829 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGGGACCTTGTTTCCCGACTGAACGGTGGTTAGTCTGGCTTCTGATGCGTTTTTTTGCACTCTCTCCCCGACTGGATCCAGCTCTTATGTCAAGGTCTCACTCAGACGCCCTATTATTACCCCTCTGTTCCCCAAAACCTGCCAGCAGCTCCGCAAATGAGATGTCTGGCTTGTCTGACGGGCCCCGAAGACAAAACTGAAAGAGTAAAGCGCAGGCCACAGAGGCCAGAGGGGTGCGGTGAATCTGTCAGGGTCGCACATTTCCCCCACAGGAATCCAGATGGAGCGCGGCAGCCGAAGGCTGGGTTGCGGTCGCTGCCGCTGCCGGCTAGGTCGCTCTCTCACAAGCTCTAATAGGCCAGAAAGCCACAATAAAACAAGCTGAACTTATTAATGAGCCCCTGTTGAGCGATGGGCTGGAGTCACAGAGTAATTGATGTGGCCTACCCACAATCCCCTGAGGAGATGGTAACTGTTGGCATGATAAGAGAAGAGGAAAGGAGTGTCCAACAGCAGCCACTGCAGCCACAGCTGTTACCCAATGGTAAATATGTCAATTTCTCTAGCTTGATTCCTATTGGCTACTTCTTTCCACAATTCCTAAGTGTTGGGATGCAACCAAAGCAGAGTTGTTCATTTATGTATTCTGACACGAGTGAAACGGGTTTTGAATGGGTCTCGGCATGCACAGAGACGTGTGCGGTCAATAACGGAGGCTGCGACAGCACGTGTCATGACGCCGTGACTGGAGTGCGCTGCAGCTGCCCGGAGGGATTCACCTTACAGCCGGACCGCAAGACCTGCAAAGACATTGATGAATGCCGCATGAACAACGGAGGGTGTGACCATGTGTGTAGAAACACGGTGGGCAGCTTCGAGTGCAGCTGCAAGAAAGGATACAAACTTCTGACCAAAGATGAGAGGACGTGCCTAGATACAGACGAGTGCTCATTTGACCGGACTTGTGACCACACATGTGTCAACTCACCTGGAAGTTTCCAGTGCTACTGCCACAAAGGTTACATCCTCTACGGCGTGGCTCACTGCGGAGATATTGACGAGTGCAGCATTAACCGGGGCGGCTGTAAATTCGGATGCGTGAACACTCTGGGCAGTTACGAGTGTACCTGCCCTCCTGGTTACAAACTGCACTGGAACAAGAAGGACTGTATCGAGCCCGTGAAATGTGCGTCCAATCTGGTGGCCCCCAAAGCCACCCTCACTTGCAGTAAGATGGGGAAAAAAGAGAGCTGCTCTCTCACATGTGCGTCCAAAGCACATTATCTATCAGAATCAGACAACAGTTATTCCGTTAGCTGTGGAATACCCATCCTGCGAGGTAAATCCCAGAGCAAATTAAACACAAGCAGCATCCAGAGCTGCATAGAGACTCAGGCTCCTCCAGTGAAGCAGACGACATCCTTTCGGATCAAGAACGCCAAATGCCACCTGCACCCGAAGCATAAGGGGAGGGCAGAGGACAACGGCAGACAGATCGGGCCAGGTGGTCAACCATGCAACAACTGCCTAGTCACATTTGTTAACCTGAAGTGTGACTCGTCTAAGAAGGCCAAAGGGCGTCGAGCACGTAACCCGTCAAGCAAAGAGGTCACACGCATCACTCTAGAGCTGGAGGCCGAAGTCAAGCCAGGGGAAACCACTGGGAACTGTAACATGATGTGTCAAAGGCAGCGCATGGAGCAGCAGATGAAGTCGTACATTAAAGCGCTGAAAAAGTCCATTAACCAGGAGCGTTTCCTCATCCGCGTGGCTGGATTGGAGTATGAGGTCGCACAGAAGCTCCCCCAGGCTGCATTGAGGCAGGAGAACTGCGGACCAGGCCGAGAGAAAGACAGCGGCCGCTGTGTCAGATGTTTGCCTGGGTCATACTACCATGGTGAGCAGGAGCGCTGCGTCCAGTGCCCACCTGGAACGTTCCAGGAGCGTGAAGGTCAGCTGGCCTGTGACCTTTGCCCTGGAACAGACCGCCATGGCCCACTAGGGGCCCGCAACATCACATCATGTGCAGGTCAATGTCCACCAGGGTATTTCTCCAGCGATGGGTTCAAGCCCTGTCAGTCGTGCCCCCTGGGAACGTACCAGCCCGACCCAGGACGAACTCTTTGTTTCCCCTGTGGAGGAGGGCTTGGTACCAAAAGAGAGGGTGCCAGCTCCTTCAATGACTGTGAGGTCAAAGGTCATTATTATAACACCTCAGTTCATCGTTGCATCCGCTGTCCTCATGGAACCTACCAGGCTGAGTTCAGACAGAATTACTGCATCTCCTGCCCTGGAAACACCACCACAGACTTTGACGGGGCCATCAGCGTCTCTCAGTGCAAGAATCGGGAATGTGGGGGTGAAATAGGAGAGTTCACCGGATACATAGAGTCCCCCAACTATCCAGGAAACTACCCAGCCAATGTAGAGTGTGTCTGGACCATCAACCCTCCACCCAAACGCAAGATTTTGATCGTGGTTCCAGAGATCTTCCTCCCATCTGAGGATGAATGTGGAGACGTCCTAGTAATGAGGAAGAACTGGTCAGCAACCTCCATCACCACCTATGAGACATGTCAGACATATGAGAGGCCGATCGCATTCACGGCCCGATCGCGCCGCCTCTGGATCAACTTCAAATCCAATGATGTAAACAGTGCTCGTGGGTTCCAGATTCCATACGTCACTTATGATGAAGACTATGAGCAGCTGGTTGAAGACATTGTAAGAGATGGAAGACTTTATGCCTCTGAAAACCATCAGGAAATACTCAAGGATAAAAAACTGATTAAAAAACTGTTCGATGTGCTGGCTCACCCAAACAATTACTACAAGTACTCACATCGGAACTCCACGGAGATGCTCCCGCGTTCGTTCATACGTCTCATCCACAGCAAAGTCTCCGCCTTCCTGCGTCCATACAAATAGTCCAAAAGCGCCGTCCGCATCCACACACCTCCAGTCACCTGGCCTCGAGTCAACGGGATCCTACACACATTTAAAGGAAATACACAAGCACACACATATTCAACAACACACACACAACCACACTATGCAGATTTCAGATGTTTCACTTTACCTTTTACTTTTCGTTTTCTTGTCCGTCATCTCTGAGGGGGAAAAAAGCTTCTGTGTAGTCTACATGTAACGCAATGAACGTGTTTCCTTTCTCTACGTGTCGGTCACCGTTCTGTGCCGTGTCGATGTTTTTGTTCGCTCATATAAACGTTTGCACGCTCAGTCCTGAGGCGTCCCGTAGAGGAAGACGATGGTTTGGGTGGTCCCACAACCACCCGAAAGAGTTTAAACACACGCCTGGTTTTCATAGACACGATAAAGAGCGTGTTGTACAGACAAAAGAAAGTTGTAGCATGTCAAAGAAAAGAAAATCTATTTGTCGAACTGGAGCTAGCTGTGATTGTGCTTTAAAAATAGGCTTCTTCCCAAGTTCCAGCTCTCGTAAACTCTACTAGTTCTCAGAATAAA

Function

GO:

id name namespace
GO:0048741 skeletal muscle fiber development biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU439440 lncRNA downstream 52111 42296 ~ 71466 (-) True G384247
TU439477 lncRNA upstream 118423 286252 ~ 287782 (-) True G384279
TU439488 lncRNA upstream 144489 312318 ~ 314443 (-) True G384286
TU439533 lncRNA upstream 157646 325475 ~ 325699 (-) True G384329
TU439535 lncRNA upstream 158818 326647 ~ 326991 (-) True G384331
CI01000192_00116033_00116872.mRNA mRNA downstream 6705 115839 ~ 116872 (-) True CI01000192_00116033_00116872
CI01000192_00169090_00206672.mRNA mRNA upstream 1140 168969 ~ 206672 (-) True CI01000192_00169090_00206672
CI01000192_00252038_00254509.mRNA mRNA upstream 82723 250552 ~ 254509 (-) True CI01000192_00252038_00254509
CI01000192_00315657_00323729.mRNA mRNA upstream 147744 315573 ~ 325189 (-) True CI01000192_00315657_00323729
CI01000192_00345708_00354498.mRNA mRNA upstream 177434 345263 ~ 356428 (-) False CI01000192_00345708_00354498
TU439471 other upstream 188300 356578 ~ 357426 (-) True G384276

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00044541 True 3259 mRNA 0.52 22 NC_007134.7 41313084 ~ 41585776 (-)
bowfin (Amia calva) AMCG00013786 True 6794 mRNA 0.46 22 CM030125.1 42893266 ~ 42936143 (+)