RNA id: TCONS_00018640



Basic Information


Item Value
RNA id TCONS_00018640
length 1267
RNA type mRNA
GC content 0.48
exon number 6
gene id XLOC_009486
representative False

Chromosome Information


Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 41711727 ~ 41744848 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence


ATGTCTGAGTCGTCCTCGAGTCAGTATGTGGATCAGTTCAGCTGTTCAGTGTGTTTGGATCTGCTGAAGGAGCCGGTGACGATTCCCTGTGGACACAGTTACTGTATGAGCTGTATTACTGACTGCTGGAGCCTGAAGGAGCAGGGGCCGCCGTACCGCTGTCCCCAATGCAGAGAGAGCTTCAGTCAGAGACCTCTACTGAAGAAGAACACTCTGATAGCTGAGATGATGGAGACGCTGCAGAAGACGGCCCTACAGacgcctgctgctgctgctgctgctgctgtggaCTGTGATGTTTGCACTACAGAGAAGAACAGAGCTGTAAAGTCCTGTCTGCAGTGCTTGGCCTCCTTCTGCCAAACTCACCTGCAGCTTCACTATGAGTCTCCTGCGTTTATGAAGCACAAACTAGTGGACGCCTCCAGACACATTCAGGAGAACATCTGCCCCAGTCATGGGAGACCGCTGGAGATTTACTGTCAGGATGATCATCAGTGTATTTGTTACCTGTGCATGGTTGACAGTCATAAGAACCACAGTGTGGTGTCTGTGGATTCAGAATGGACCAATAAGAAGAAAGAGTTGGAGAAGATAAAGGTGGAGTGTGTAAAGCTGATCGAGGAGCGAGAGAAAGGTCAACAGGAACTCAGTAAAGCTGTCAAGCCTTTTAAAAGTTCAGCCCAGAAGGCCATCAAGAGGATGGAGAAGGTGTTCACTGAGCTCATCGGCTCTCTGCAGAAGAAACGCTCTGAGATTAAAGAGCAGATCAGAGCTCAGGAGAAGACTGAGACAGATCGAGCAGAGCAACTTCACCAACATCTGCATCAAGAGCTGACACAACTCAGAAAAACACAAGCAGAGATCCACAAACTGCTCACTACTGAAGACCAGATCCACTGTCTGAAGAgctgtgagtctgtgtgtgttttacccACATGTGAAGATGTTCCCAGCTTCACTCCACACACTCATCTGTCTTTTAAAGACCTTTCATTCCCTCTATTCAGAGAGGCTTTAGAGGACGCCTGTCAACAGCAAACAGAGGCAATATCCAGAGAAGTGTCAAACGTTCATGTAGTAAATCCTCCAGAACCAAAGACTCCAAATGAGTTTTTGCAGTGAATTCTGTCCTTTTACAGCGTCTCTGACACAATGACCCTCCTTTATAAAGTCCAGACCACCTTCACTGAACCACTGTACCCTGCATTTGGGCTTGGAGAAGGTTCTATCAGGATCAAAGCAGAGTAGTTTTCTTACAGGCAAG

Function


GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000154113

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TCONS_00019235 lncRNA downstream 44372 41640441 ~ 41667355 (-) False XLOC_009483
TCONS_00018634 lncRNA downstream 44372 41642854 ~ 41667355 (-) True XLOC_009483
TCONS_00018610 lncRNA downstream 465718 41238245 ~ 41246009 (-) True XLOC_009474
TCONS_00019234 lncRNA downstream 465906 41238245 ~ 41245821 (-) False XLOC_009474
TCONS_00019233 lncRNA downstream 639530 41068774 ~ 41072197 (-) True XLOC_009472
TCONS_00019236 lncRNA upstream 6722 41721051 ~ 41744848 (-) False XLOC_009486
TCONS_00018843 lncRNA upstream 339510 42053839 ~ 42058846 (-) True XLOC_009494
TCONS_00018655 lncRNA upstream 349854 42064183 ~ 42066345 (-) True XLOC_009495
TCONS_00018656 lncRNA upstream 366065 42080394 ~ 42086212 (-) True XLOC_009496
TCONS_00019237 lncRNA upstream 391113 42105442 ~ 42106950 (-) True XLOC_009497
TCONS_00018638 mRNA downstream 3070 41693635 ~ 41708657 (-) False XLOC_009485
TCONS_00018639 mRNA downstream 11321 41697758 ~ 41700406 (-) True XLOC_009485
TCONS_00018635 mRNA downstream 21746 41670742 ~ 41689981 (-) False XLOC_009484
TCONS_00018637 mRNA downstream 22043 41677393 ~ 41689684 (-) True XLOC_009484
TCONS_00018636 mRNA downstream 34038 41670753 ~ 41677689 (-) False XLOC_009484
TCONS_00018642 mRNA upstream 2392 41716721 ~ 41720173 (-) False XLOC_009487
TCONS_00018643 mRNA upstream 4421 41718750 ~ 41720215 (-) True XLOC_009487
TCONS_00018644 mRNA upstream 6721 41721050 ~ 41734639 (-) False XLOC_009486
TCONS_00018645 mRNA upstream 21228 41735557 ~ 41744509 (-) False XLOC_009486
TCONS_00018646 mRNA upstream 23584 41737913 ~ 41744529 (-) True XLOC_009486
TCONS_00018633 other downstream 168287 41529260 ~ 41543440 (-) True XLOC_009482
TCONS_00018622 other downstream 315654 41393401 ~ 41396073 (-) True XLOC_009478
TCONS_00018590 other downstream 1642600 40069011 ~ 40069127 (-) True XLOC_009467
TCONS_00018535 other downstream 3982561 37727834 ~ 37729166 (-) True XLOC_009432
TCONS_00018517 other downstream 4837361 36874251 ~ 36874366 (-) True XLOC_009420
TCONS_00018660 other upstream 563344 42277673 ~ 42283815 (-) True XLOC_009502
TCONS_00018661 other upstream 814461 42528790 ~ 42528904 (-) True XLOC_009503
TCONS_00018665 other upstream 1014141 42728470 ~ 42728586 (-) True XLOC_009507
TCONS_00018678 other upstream 1937317 43651646 ~ 43651761 (-) True XLOC_009518
TCONS_00018686 other upstream 2303104 44017433 ~ 44017563 (-) True XLOC_009524

Expression Profile


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