RNA id: TCONS_00018644


Basic Information

Item Value
RNA id TCONS_00018644
length 3024
RNA type mRNA
GC content 0.44
exon number 7
gene id XLOC_009486
representative False

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 41711727 ~ 41744848 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGCTAGATTAAAGCTGTACGTATGAAACATTTAACTTATTTTGAACAGAAATGTCTGAGTTGTCCTCAAGTGAGTATGTGGATCAGTTCAGCTGTCCAGTGTGTTTGGATCCGCTGAAGGAGCCGGTGACGATTCCCTGTGGACACAGTTACTGTATGAGCTGTATTACTGACTGCTGGAGCCTGAAGGAGCAGGGGCCGCCGTACCGCTGTCCCCAATGCAGAGAGAGCTTCAGTCAGAGACCTCTACTGAAGAAGAACGGTCAGGGTATATGATGGAGACGCTGCAGAAGACGACCCTACAGacgcctgctgctgctgctgctgtggaCTGTGATGTTTGCTCTACAGAGAAGAACAGAGCTGTAAAGTCCTGTCTGCAGTGCTTGGCCTCCTTCTGCCAAACTCACCTGCAGCCTCACTATGAGTCTCCTGCGTTTATGAAGCACAAACTAGTGGACGCCTCCAGACACATTCAGGAGAACATCTGCCCCAGTCATGGGAAACCGCTGGAGATTTACTGTCAGGATGATCATCAGTGCATTTGTTACCTGTGCATGATTGACAGTCATCAAAACCACAGTGTGGTGTCTGTGGATTCAGAATGGACCAAAAAGAAGAAAAAGTTAAAGGAGACGAAGGTGAAATGTCTAAAGCTGATCGAGGAGCGAGAGAAAGGTCAACAGGAACTCAGTGAAGCTGTCAAGTCTCTTAAAAGTTCAGCTGACGAGGCGGTGGAGAAGATGGAGAAGGTGTTCACTGAGCTCATCTGCTCTCTGGAGAAGAAACGCTCTGAGATTAAAGAGCAGATCAGAGCTCAGGAGAAGACCGAGACAGATCGAGCAGAGCAACTTCACCAACATCTGCATCAAGAGCTGACACAACTCAGAAAAACACAAGCAGAGATCCACAAACTGCTCACTACTGAAGACCAGATCCACTGTCTGAAGagctgtgagtctgtgtgtgttttacccACATTTGAAGATGTTCCCAGCTTCACCCCACACACTGAACTGTCTTTTAAAGACCTTTCATTCTCAGCATTCAGAAAGGATTTAGAGGACACCTGTCGACAGCTAACGGATGCAATAAGCAGAGAAGTGTCAAACGTTCATGTTGTACAGACTCCAAATCAATTCCTGCAATATTTCTGTCAGCCGGAACTGGATCCAAACACTGTAAATAAAGAACTCAAACTGTCTGAAGACAACAGGAAGGTTTCATATTCACATACAGTTCAGCGGTATCCTGATCACCCAGAGCGATTTGATCCATGTAATTATGTGATGTGTAAAGAGGGATTGACTGGTCGATGTTATTGGGAGGTCGTGGGCAGTGGGAATGAATGGGCTGTTGCTGTTTGCTACAAAGGCATTGGACGTAAAGGAATGGGTGACTGTAGATTTGGCTTCAACAAAATATCCTGGAGACTGGGCTATTGTCTACCAAATTTCTGTTTCATACATGGTAACAGACTGGTCCGTGTCCCTCTTGCGTCTAGAATAGGAGTGTATCTGGACCACAGAGCAGGAATTctgtccttttacagcatctctGACACAATGACCCTCCTTTATAAAGTCAAGACCACCTTCAATGAACCACTGTACCCTGCGTTTCTAACTGGAAATGGTTCTTCAGTCAAGATAATCCAACCAAGGATAGTTGAGAAAGACCAAAAATGAATTTCACTGACTGAGTTCCAGATTTAGCTGCTGAACTCAAACGTGTATGTTTAAATCTAAATGCTATTTgtagtttaaataaacaaaacattaagaAAAAAGGCATAAGGTGGATATGATATGGTTAGTTGAGACTCTCAAATTGAATATCACTGAATAGGTCTTCAGTTTATTATCAGATGTGTACTTCAGAAATTGGTTATAGTGGAATCTGTAtgatacactttattttaagatacaaTCACTATTACATACAAAGATTTTCACTAGATTACCAAACCATTAGCTAAAACTTGTAGCTGAAACTGCTTTTTTTAAGATCGTGTCAAAGTAGTTTATCTTAGAAGTGCTAGTAAAtggaaactgtcagtccagttttcagagttgaagttcagtgctatgcagttcagtgtggtttaattttcactggtgagagtccaaacactgaagagcaaatccatcgatacgcagctccacaagtcccaaaccaagcaagccagtggtgaagaagaaaacttcaccaattaaccttgagagaaacaagccgttgagcacgaccatttctcctctgaccaGGAAgaaagctgaactgccgctctaggcaaaggatggTCACGCtgccctcaaccctaaagtgaaaGTCGCCACCCTCTCTTTTCTACCGCACTAGAAGTGGATATAATTGAGGAAAGGTAGTGTCGTGGACACTGCCCTCTTTATTCTCTTTATAGATGCGGATATTACTGAAGGCGCAGGtgctgagggtagtgtcggggacgccgccctctcttcCGCCGCtttagacacggatataactgagggcgcaggtagtgtcggggatgctgccctccgcctaggtcgcctctatggacgcgccaaACTTTTATTCTATGACCAAactttttgtgcagagctgcagtccaggttccggaggctggagaacgctggatgtcCAGTGTGGAGacgctgcaggtgtgagtaggtcacagGCTGGCCTGcaggatcaatgcgaagactcgtTTGTCACTGGGTCTTTCacaaatcagtctcatgctcttcactcctccatgactgccacagcatctgctcaggatacggcctggtctagGATAACGGAGACCTTGGGATAATtgaaaacagactaacataagtgtAGATGCCATTCAAATTATATCTTTTGTGGAGTGTGCCCTGCTCTGGTTGCCCTAATTAATGCAGCCTAACAATCCTTTGGAGGATTTAGATTTCAAaagtatttgtgttttatatgtCTTTGATTAATTCAGAAAATATTTGTCATGTTATCATGTGCTATTCAATAAAATGAACAGACATTA

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000154230

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00019235 lncRNA downstream 53695 41640441 ~ 41667355 (-) False XLOC_009483
TCONS_00018634 lncRNA downstream 53695 41642854 ~ 41667355 (-) True XLOC_009483
TCONS_00018610 lncRNA downstream 475041 41238245 ~ 41246009 (-) True XLOC_009474
TCONS_00019234 lncRNA downstream 475229 41238245 ~ 41245821 (-) False XLOC_009474
TCONS_00019233 lncRNA downstream 648853 41068774 ~ 41072197 (-) True XLOC_009472
TCONS_00018843 lncRNA upstream 319200 42053839 ~ 42058846 (-) True XLOC_009494
TCONS_00018655 lncRNA upstream 329544 42064183 ~ 42066345 (-) True XLOC_009495
TCONS_00018656 lncRNA upstream 345755 42080394 ~ 42086212 (-) True XLOC_009496
TCONS_00019237 lncRNA upstream 370803 42105442 ~ 42106950 (-) True XLOC_009497
TCONS_00018657 lncRNA upstream 401448 42136087 ~ 42139836 (-) True XLOC_009498
TCONS_00018643 mRNA downstream 835 41718750 ~ 41720215 (-) True XLOC_009487
TCONS_00018642 mRNA downstream 877 41716721 ~ 41720173 (-) False XLOC_009487
TCONS_00018640 mRNA downstream 6721 41711727 ~ 41714329 (-) False XLOC_009486
TCONS_00018638 mRNA downstream 12393 41693635 ~ 41708657 (-) False XLOC_009485
TCONS_00018639 mRNA downstream 20644 41697758 ~ 41700406 (-) True XLOC_009485
TCONS_00018645 mRNA upstream 918 41735557 ~ 41744509 (-) False XLOC_009486
TCONS_00018646 mRNA upstream 3274 41737913 ~ 41744529 (-) True XLOC_009486
TCONS_00018647 mRNA upstream 12081 41746720 ~ 41749364 (-) True XLOC_009488
TCONS_00018648 mRNA upstream 17696 41752335 ~ 41756507 (-) False XLOC_009489
TCONS_00018649 mRNA upstream 20474 41755113 ~ 41756454 (-) True XLOC_009489
TCONS_00018633 other downstream 177610 41529260 ~ 41543440 (-) True XLOC_009482
TCONS_00018622 other downstream 324977 41393401 ~ 41396073 (-) True XLOC_009478
TCONS_00018590 other downstream 1651923 40069011 ~ 40069127 (-) True XLOC_009467
TCONS_00018535 other downstream 3991884 37727834 ~ 37729166 (-) True XLOC_009432
TCONS_00018517 other downstream 4846684 36874251 ~ 36874366 (-) True XLOC_009420
TCONS_00018660 other upstream 543034 42277673 ~ 42283815 (-) True XLOC_009502
TCONS_00018661 other upstream 794151 42528790 ~ 42528904 (-) True XLOC_009503
TCONS_00018665 other upstream 993831 42728470 ~ 42728586 (-) True XLOC_009507
TCONS_00018678 other upstream 1917007 43651646 ~ 43651761 (-) True XLOC_009518
TCONS_00018686 other upstream 2282794 44017433 ~ 44017563 (-) True XLOC_009524

Expression Profile

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