RNA id: TCONS_00018645


Basic Information

Item Value
RNA id TCONS_00018645
length 4123
RNA type mRNA
GC content 0.36
exon number 5
gene id XLOC_009486
representative False

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 41711727 ~ 41744848 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGTCTGAATCATCCTCGAGTCAGTATGTGGATCAGTTCAGCTGTCCAGTGTGTTTGGATCCGCTGAAGGAGCCGGTGACGATTCCCTGTGGACACAGTTACTGTATGAGCTGTATTACTGACTGCTGGAGCCTGAAGGAGCAGGGGCCGCCGTACCGCTGTCCCCAATGCAGAGAGAGCTTCAGTCAGAGACCTCTACTGAAGAAGAACACTCTGATAGCTGAGATGATGGAGACGCTGCAGAAGACGGCCCTACAGacgcctgctgctgctgctgctgctgtggaCTGTGATGTTTGCACTACAGAGAAGAACAGAGCTGTAAAGTCCTGTCTGCAGTGCTTGGCCTCCTTCTGCCAAACTCACCTGCAGCTTCACTATGAGTCTCCTGCGTTTATGAAGCACAAACTAGTGGACGCCTCCAGACACATTCAGGAGAACATCTGCCCCAGTCATGGGAGACCGCTGGAGATTTACTGTCAGGATGATCATCAGTGCATTTGTTGCATGTGCACCGATAATCACAAAGGACACAAAGTGGTGTATGTGGATACAGAATGGACTAGTAAAAAGAAAGTGTTAGAAGAGATGAAGCTGACGTGTCTAAAGCTGATCCAGGAACGAGAGAAAGGTCAACAGGAACTTAGTGAAGCTGCAAAACTTCTTAAGAGTTCAGCAGATGAGGCGGTGGAGAAGATGGAGAAGGTGTTCACTGAGCTCATCTGCTCTCTGGAGAAGAAACGCTCTGAGATTAAAGAGCAGATCAGAGCTCAGGAGAAGACGGAGACAGATCGAGCAGAGCAACTTCACCAACATCTGCATCAAGAGCTGACACAACTCAGAAAAACACAAGCAGAGATCCACAAACTGCTCACTACTGAAGACCAGATCCACTGTCTGAAgAgctgtgagtctgtgtgtgttttacccACATTTGAAGACGTTCCCAGCTTCACTTCACACACTCATCTGTCTTTTAAAGACCTTTCAATCTCAGCATTCAGAGAGGCTTTAGAGGACGCCTGTCAGACGCAAACAAACATATTATTCAGAGAAGGtctgaatattttatttagacttttattttattttattttacacaaagaTAAACATTATGTTGTTTCTTTTTGTGTTCTCAGTGTCTAATGTCCATGTTGCCGAGCCTCCAGAACCTAAAATGCAAAATGATTTTTTGCAATACTTCTGTGAGCTACAACTGGACCcacacactgcaggcaaaaaaaTCAAACtgtcaaacacaaacaaaaaagcgACCTACTCAGATGCAGTCCAGCAGTACCCTGATCACCCAGAGCGGTTTGATTTCCCCTACATCCTATGTAGAGAAGTTTTAAACAGTCGCTGTTATTGGGAGGTTGAGTGCAGTGGCAACAGTTGGGCTGTAGGTGTTTGTTACAAAGGAATTGGACGCAAAGGATTCACTGATGATTGCAGACTTGGCTTCAACAACAATTCCTGGCGATTGGGCTATTATCAGCAGAATTTTAGTTTTATACATGATAAAGCACTGCTCCGTAGTTTAACCATCCGCCCTGCCTCTAGAATAGGAGTATATCTGGACCACAGAGCAGGAATTCTGTCTTTCTACAGCATCTCAAACACAATGACCCTCCTTCACAGAGTCCAGACCACCTTCACTGAACCACTGTACCCTGCGTTTCTAACTGACTCTGGTTCATCCGTTTTAATCCTAGAGAAGTCAGTTCACAAATGCAAAAAATAGACTTTGCTGTTAATGTATTCAGAGCAGTGCGCTTGTGTGTGCATTTTCTTTTTCCTtctcatttagtttttattgcagttttcaAATTTACATACAGGTGTATTGTATATAGGGTTTTTCACAATGGGTACACAAAACAACCAAACATCAGAATTCCGAAATTgtagaaataaatgaaattataaaataccaaaacaaatccataaataaaaaaattaatacagaAGTTACAACAATGATTAATTGacattataaaaacaatcaaaacaatacaCTCATCATTGTTTTGTatattgtcaaaaacaaaacTGATAAAATAGATTTGTTGCTTTTTCAGGTACAATTCAAttgtgtacttttttttaaacccatgTTGTGGCACCCAGTCTacgctttccttttttttttttattattacctaaactatatacatataaaactgtaaggatgtaattttttttctgtgattacaaaaaaaaagaagaaatacacaaaataaaattcacctCTTTCTGACTATACATTCTATAACAAACATGGTCTTAATGGAAGAATATATTCTACCCATTTTCTCAATGTCTCATTAAACTCTTCAGTCTGTTAACGATGATTACTTGTTTGCCTCTCCATCTTTTTCATTTCATAAATAATGTCAAACTAGTCACTAATTTGAGGTTTTTTGAGCTGTAACCATTTTTTGGATACGTCTTTTTTGCAGGCTATCAGCAAaattttctgcagtttttttggTCAGATTTTTCTTCTAACATGCagactgtaaaaccccaaaagttaaggtaactcaaaccattttaaggaaaccaattgcaacaaactattcAAGTTCAAAtactaatcctaataagtactgtgaacttacaccATTTAAGTAATAGAAGCAATTTGGGCACAGTAAAACCCgctaaatgaagagaactcaaccGAGTacagtaaaatccaataagttaaggcaactcaaactgtttgaaaccaattgctgcaaaccatttgagttaaaaacaaactaatctatatgagtattgtgaacttgtatgatgaagtaatgaagtatttaattagctcaataccttcaacactgattttaaaactcttttcaaatgagtaggattaactttcagtacattttgagttatctacactcattttatttgataaagttgaatgttgggttttacagtgcaggatTTTTTAGGCCTAAATATAGAGTTGAGAAAGAAAACTGATGGGGATATGGAATACATTCTCTAAATATTCCAAAATGccagattttttaaacatttccagaAAATATGTAAATCATTTGCTTCATTTGAGCCACATAGTCTCCAACAGACTGCATTTTTGTTTAAGTATCTCTTCTACTCAGGGGTGATGAATAAACGTGTGATATTTTTCCAACCAAATTCCCTCCAGACTGAGGAGGATGTTATTTACCGctgtgttttaaaaatactttttcacTCTTactctttcaaatatttttaatattacccTCTTTTTTCCATCTATTTTTATATAACATGTATTCTCTAATTTATTGTCTTGTTGACttttatataattattgtatataaattattattatatagtaattAATTTGGTCATGCTGGCTCCTTTATAAGCTGAGATAAATATTGTAAGAAgacttattatttttgttttcatcgCCGTTTCTGATGTTTTTAATTTTGTGTCTTATCTGTAAATATCTTTGAAAGTCATAAACACTCagggaattttcatttttgaaagttttaaatCCTTAACACTTCCATTATATAGAAAAGTGCAGTATGCCATGAGTCTTTTCTTATTCCAAACTTTGAAACTAGTGTATTTTGTTTGGGGCAAATGTGGAGTCTGGCCATCTCAGTATTGATACAGATTGGCCATCTCAGTATTGATACAGATTCCATTAAATCTGTATCAATACTGATACATTCcattatttttcttatatttcTTGCCAagcttttttaattgtttgtccATACGttaatttctgtgtgtgtgtgtgcatttatttgtttctATGACATTAAGCTTAGGTGTTGAAGTTGAAATGGTGAATCGTGTCAATTATAAATCAAAGATGTTTTTCTTTGTCAAATTCATTGTCGTGCTTCAgtcctttttttttataatgactTATAGAATAAGTGTAAGAAGTCAAATGCAAAGTGATCCATTCAGTGTTTAAAATGAGTACATGTACATGTTTATTCTTAGAAAAAGGTGGCAATGATTTTCTGTTCCCTATGCACTTTACATGTGTCAAAATGCATTTGTGAGTTTTCTGTTTACATGctgctttacaaaaataaaagtatattataCATACCagagtgtgttttttgtg

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000176952

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00019235 lncRNA downstream 68202 41640441 ~ 41667355 (-) False XLOC_009483
TCONS_00018634 lncRNA downstream 68202 41642854 ~ 41667355 (-) True XLOC_009483
TCONS_00018610 lncRNA downstream 489548 41238245 ~ 41246009 (-) True XLOC_009474
TCONS_00019234 lncRNA downstream 489736 41238245 ~ 41245821 (-) False XLOC_009474
TCONS_00019233 lncRNA downstream 663360 41068774 ~ 41072197 (-) True XLOC_009472
TCONS_00018843 lncRNA upstream 309330 42053839 ~ 42058846 (-) True XLOC_009494
TCONS_00018655 lncRNA upstream 319674 42064183 ~ 42066345 (-) True XLOC_009495
TCONS_00018656 lncRNA upstream 335885 42080394 ~ 42086212 (-) True XLOC_009496
TCONS_00019237 lncRNA upstream 360933 42105442 ~ 42106950 (-) True XLOC_009497
TCONS_00018657 lncRNA upstream 391578 42136087 ~ 42139836 (-) True XLOC_009498
TCONS_00018641 mRNA downstream 834 41711743 ~ 41734723 (-) False XLOC_009486
TCONS_00018644 mRNA downstream 918 41721050 ~ 41734639 (-) False XLOC_009486
TCONS_00018643 mRNA downstream 15342 41718750 ~ 41720215 (-) True XLOC_009487
TCONS_00018642 mRNA downstream 15384 41716721 ~ 41720173 (-) False XLOC_009487
TCONS_00018640 mRNA downstream 21228 41711727 ~ 41714329 (-) False XLOC_009486
TCONS_00018647 mRNA upstream 2211 41746720 ~ 41749364 (-) True XLOC_009488
TCONS_00018648 mRNA upstream 7826 41752335 ~ 41756507 (-) False XLOC_009489
TCONS_00018649 mRNA upstream 10604 41755113 ~ 41756454 (-) True XLOC_009489
TCONS_00018650 mRNA upstream 12933 41757442 ~ 41762565 (-) False XLOC_009490
TCONS_00018651 mRNA upstream 13815 41758324 ~ 41762530 (-) True XLOC_009490
TCONS_00018633 other downstream 192117 41529260 ~ 41543440 (-) True XLOC_009482
TCONS_00018622 other downstream 339484 41393401 ~ 41396073 (-) True XLOC_009478
TCONS_00018590 other downstream 1666430 40069011 ~ 40069127 (-) True XLOC_009467
TCONS_00018535 other downstream 4006391 37727834 ~ 37729166 (-) True XLOC_009432
TCONS_00018517 other downstream 4861191 36874251 ~ 36874366 (-) True XLOC_009420
TCONS_00018660 other upstream 533164 42277673 ~ 42283815 (-) True XLOC_009502
TCONS_00018661 other upstream 784281 42528790 ~ 42528904 (-) True XLOC_009503
TCONS_00018665 other upstream 983961 42728470 ~ 42728586 (-) True XLOC_009507
TCONS_00018678 other upstream 1907137 43651646 ~ 43651761 (-) True XLOC_009518
TCONS_00018686 other upstream 2272924 44017433 ~ 44017563 (-) True XLOC_009524

Expression Profile

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